View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11771_low_4 (Length: 606)

Name: NF11771_low_4
Description: NF11771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11771_low_4
NF11771_low_4
[»] chr3 (26 HSPs)
chr3 (1-262)||(26922958-26923219)
chr3 (369-591)||(26923216-26923441)
chr3 (410-572)||(13893872-13894034)
chr3 (457-551)||(49543486-49543580)
chr3 (447-572)||(29127865-29127990)
chr3 (411-572)||(45877400-45877561)
chr3 (410-522)||(23511563-23511675)
chr3 (436-551)||(6462379-6462494)
chr3 (411-561)||(29762155-29762305)
chr3 (410-572)||(33251608-33251770)
chr3 (470-572)||(51683013-51683115)
chr3 (457-561)||(10040514-10040617)
chr3 (412-548)||(53649697-53649833)
chr3 (447-514)||(24506684-24506750)
chr3 (410-561)||(25294917-25295068)
chr3 (447-570)||(49082772-49082895)
chr3 (416-494)||(35923628-35923706)
chr3 (504-561)||(39849029-39849086)
chr3 (410-521)||(51060280-51060391)
chr3 (504-551)||(52011061-52011108)
chr3 (441-571)||(3136724-3136853)
chr3 (410-572)||(15320132-15320294)
chr3 (447-513)||(50405639-50405705)
chr3 (410-519)||(54237447-54237556)
chr3 (447-546)||(26362003-26362100)
chr3 (410-546)||(47219116-47219252)
[»] chr6 (27 HSPs)
chr6 (410-576)||(13036002-13036168)
chr6 (410-572)||(14107356-14107518)
chr6 (470-549)||(32048424-32048503)
chr6 (410-516)||(5029823-5029929)
chr6 (410-551)||(3601055-3601196)
chr6 (410-561)||(10311467-10311618)
chr6 (440-551)||(29444793-29444904)
chr6 (416-561)||(2271307-2271450)
chr6 (441-495)||(11142630-11142684)
chr6 (484-549)||(4596106-4596171)
chr6 (410-551)||(6606095-6606236)
chr6 (421-532)||(8888872-8888983)
chr6 (410-561)||(13468894-13469045)
chr6 (461-572)||(29333188-29333298)
chr6 (447-561)||(21898609-21898723)
chr6 (410-551)||(30788851-30788990)
chr6 (411-520)||(13391289-13391397)
chr6 (447-572)||(19230594-19230717)
chr6 (504-572)||(3030710-3030778)
chr6 (447-551)||(12606401-12606505)
chr6 (410-557)||(12635779-12635926)
chr6 (448-550)||(9366459-9366561)
chr6 (441-551)||(34954648-34954758)
chr6 (411-572)||(8938661-8938822)
chr6 (412-549)||(32157167-32157304)
chr6 (504-572)||(9179828-9179896)
chr6 (448-532)||(33859355-33859439)
[»] chr7 (31 HSPs)
chr7 (410-561)||(1797420-1797571)
chr7 (411-561)||(22573773-22573922)
chr7 (411-551)||(3353395-3353534)
chr7 (451-551)||(44336863-44336963)
chr7 (457-572)||(42210307-42210422)
chr7 (410-548)||(22973940-22974078)
chr7 (410-572)||(34659175-34659337)
chr7 (447-572)||(26423322-26423447)
chr7 (410-551)||(43861970-43862111)
chr7 (410-561)||(48804643-48804794)
chr7 (447-546)||(365115-365214)
chr7 (441-572)||(17748411-17748542)
chr7 (441-563)||(41267953-41268076)
chr7 (410-561)||(43925472-43925623)
chr7 (410-480)||(21190778-21190848)
chr7 (469-559)||(23823911-23824001)
chr7 (417-572)||(4228759-4228911)
chr7 (410-571)||(23658130-23658290)
chr7 (447-551)||(45447940-45448044)
chr7 (498-561)||(9685699-9685762)
chr7 (410-551)||(10047874-10048015)
chr7 (441-571)||(42032046-42032176)
chr7 (447-549)||(48224766-48224867)
chr7 (414-543)||(14535269-14535398)
chr7 (428-501)||(20097209-20097282)
chr7 (471-572)||(22268088-22268189)
chr7 (410-551)||(36619252-36619393)
chr7 (457-550)||(37514892-37514985)
chr7 (504-572)||(5039510-5039578)
chr7 (470-522)||(29151939-29151991)
chr7 (410-550)||(44961636-44961776)
[»] chr4 (32 HSPs)
chr4 (441-545)||(21429279-21429383)
chr4 (410-561)||(24166412-24166563)
chr4 (410-559)||(36145213-36145362)
chr4 (410-571)||(10540968-10541128)
chr4 (410-551)||(20128281-20128422)
chr4 (412-551)||(7741897-7742036)
chr4 (412-551)||(33647693-33647832)
chr4 (411-561)||(29895749-29895899)
chr4 (412-572)||(40780861-40781021)
chr4 (410-542)||(48015071-48015203)
chr4 (461-572)||(38075384-38075495)
chr4 (416-542)||(8824545-8824671)
chr4 (431-513)||(26237441-26237523)
chr4 (410-571)||(5472846-5473007)
chr4 (441-561)||(1446788-1446908)
chr4 (447-551)||(49952181-49952285)
chr4 (447-561)||(3574481-3574595)
chr4 (410-551)||(20421746-20421886)
chr4 (461-570)||(40272380-40272489)
chr4 (447-551)||(47078430-47078534)
chr4 (498-561)||(13552076-13552139)
chr4 (432-551)||(20354609-20354728)
chr4 (461-572)||(53599011-53599122)
chr4 (447-545)||(14567937-14568035)
chr4 (447-517)||(14859297-14859367)
chr4 (410-572)||(38165978-38166140)
chr4 (447-520)||(3159504-3159577)
chr4 (411-572)||(15829650-15829811)
chr4 (471-572)||(52950033-52950134)
chr4 (414-572)||(1940779-1940934)
chr4 (410-486)||(14858747-14858823)
chr4 (410-486)||(17946526-17946602)
[»] chr1 (40 HSPs)
chr1 (411-551)||(2567244-2567384)
chr1 (420-572)||(10336463-10336615)
chr1 (461-571)||(32150972-32151082)
chr1 (410-561)||(26325770-26325921)
chr1 (447-561)||(48798106-48798220)
chr1 (410-521)||(13262081-13262192)
chr1 (410-572)||(41663855-41664017)
chr1 (411-572)||(5503978-5504139)
chr1 (447-572)||(5855469-5855594)
chr1 (449-546)||(18649390-18649487)
chr1 (447-548)||(33004051-33004152)
chr1 (447-551)||(16956434-16956538)
chr1 (410-561)||(8763949-8764100)
chr1 (444-551)||(17358504-17358611)
chr1 (414-551)||(17092480-17092617)
chr1 (504-561)||(41743231-41743288)
chr1 (410-494)||(28416971-28417055)
chr1 (447-551)||(40226278-40226382)
chr1 (441-572)||(10422735-10422866)
chr1 (410-561)||(43959820-43959971)
chr1 (410-561)||(49078072-49078223)
chr1 (457-548)||(50503407-50503498)
chr1 (441-563)||(9659209-9659330)
chr1 (441-551)||(14254298-14254408)
chr1 (450-544)||(15465940-15466034)
chr1 (461-543)||(42710188-42710270)
chr1 (410-551)||(17389740-17389880)
chr1 (449-554)||(26258661-26258765)
chr1 (447-551)||(40288513-40288617)
chr1 (441-572)||(31152663-31152794)
chr1 (471-546)||(51437442-51437517)
chr1 (447-561)||(26660096-26660210)
chr1 (526-575)||(5063958-5064007)
chr1 (527-572)||(33418231-33418276)
chr1 (470-551)||(45361941-45362022)
chr1 (471-543)||(12744583-12744655)
chr1 (471-543)||(12755573-12755645)
chr1 (447-551)||(15238142-15238246)
chr1 (447-491)||(34719804-34719848)
chr1 (411-511)||(50371834-50371934)
[»] chr2 (41 HSPs)
chr2 (412-551)||(2784900-2785038)
chr2 (411-572)||(12864170-12864331)
chr2 (410-550)||(34722649-34722788)
chr2 (410-572)||(37560119-37560281)
chr2 (447-572)||(41187795-41187920)
chr2 (411-522)||(18846220-18846331)
chr2 (457-560)||(21286402-21286505)
chr2 (410-561)||(25549685-25549836)
chr2 (410-549)||(28616377-28616516)
chr2 (447-549)||(16034906-16035008)
chr2 (504-572)||(23500774-23500841)
chr2 (410-561)||(18902528-18902679)
chr2 (471-561)||(19976866-19976956)
chr2 (461-539)||(40968964-40969042)
chr2 (411-572)||(14169608-14169769)
chr2 (447-551)||(10026651-10026755)
chr2 (447-551)||(10046512-10046615)
chr2 (447-551)||(13026446-13026550)
chr2 (410-561)||(8410088-8410239)
chr2 (414-549)||(31740763-31740898)
chr2 (447-520)||(3848949-3849022)
chr2 (500-549)||(14506544-14506593)
chr2 (449-549)||(20533087-20533187)
chr2 (457-561)||(29653584-29653688)
chr2 (447-551)||(39201543-39201647)
chr2 (457-561)||(42770696-42770800)
chr2 (470-561)||(2528399-2528490)
chr2 (504-551)||(3811783-3811830)
chr2 (410-521)||(12455307-12455418)
chr2 (410-549)||(15234059-15234198)
chr2 (484-551)||(31596504-31596571)
chr2 (447-561)||(7747231-7747345)
chr2 (447-561)||(15079440-15079554)
chr2 (457-519)||(16636110-16636172)
chr2 (470-572)||(34356152-34356254)
chr2 (411-549)||(38962732-38962870)
chr2 (411-521)||(39806884-39806994)
chr2 (504-561)||(2550825-2550882)
chr2 (447-572)||(18649061-18649186)
chr2 (447-572)||(21180349-21180474)
chr2 (410-551)||(25540402-25540543)
[»] chr5 (44 HSPs)
chr5 (410-561)||(42086285-42086436)
chr5 (410-576)||(23247350-23247515)
chr5 (410-572)||(1538378-1538540)
chr5 (418-551)||(7308370-7308503)
chr5 (411-532)||(21149721-21149842)
chr5 (410-494)||(7616945-7617029)
chr5 (410-532)||(7336607-7336728)
chr5 (457-551)||(24875313-24875407)
chr5 (447-561)||(25417218-25417332)
chr5 (498-560)||(28862784-28862846)
chr5 (440-572)||(1826804-1826937)
chr5 (410-551)||(8513487-8513628)
chr5 (470-551)||(11845859-11845940)
chr5 (441-550)||(35638062-35638171)
chr5 (461-521)||(20705561-20705621)
chr5 (410-494)||(21375376-21375460)
chr5 (470-549)||(21487587-21487666)
chr5 (449-551)||(13664228-13664330)
chr5 (441-551)||(14588646-14588756)
chr5 (470-572)||(18136338-18136440)
chr5 (440-554)||(24498948-24499061)
chr5 (445-550)||(35245039-35245144)
chr5 (412-561)||(37263199-37263347)
chr5 (410-551)||(38897717-38897857)
chr5 (410-494)||(3653912-3653996)
chr5 (471-551)||(16755029-16755109)
chr5 (457-521)||(28615248-28615311)
chr5 (410-534)||(40117400-40117524)
chr5 (445-572)||(4016288-4016415)
chr5 (410-521)||(18262616-18262727)
chr5 (504-551)||(20223024-20223071)
chr5 (441-512)||(22655186-22655257)
chr5 (410-572)||(5079278-5079439)
chr5 (447-561)||(5731955-5732069)
chr5 (447-561)||(19572682-19572796)
chr5 (447-521)||(38369698-38369771)
chr5 (457-542)||(12081885-12081970)
chr5 (526-579)||(23383588-23383641)
chr5 (472-521)||(24653871-24653920)
chr5 (476-572)||(7736818-7736914)
chr5 (503-551)||(18327738-18327786)
chr5 (447-519)||(19839327-19839399)
chr5 (471-571)||(25950641-25950741)
chr5 (412-520)||(42291505-42291613)
[»] chr8 (23 HSPs)
chr8 (451-551)||(20240541-20240641)
chr8 (451-551)||(20252426-20252526)
chr8 (461-572)||(8141052-8141163)
chr8 (410-572)||(3418511-3418673)
chr8 (447-571)||(33401834-33401958)
chr8 (410-572)||(583764-583924)
chr8 (410-561)||(14666069-14666220)
chr8 (449-560)||(30903298-30903408)
chr8 (411-551)||(18373981-18374121)
chr8 (457-561)||(35496300-35496403)
chr8 (410-561)||(2467116-2467267)
chr8 (447-572)||(33935770-33935895)
chr8 (497-549)||(36662377-36662430)
chr8 (484-560)||(68170-68246)
chr8 (449-561)||(13085485-13085597)
chr8 (457-561)||(38922459-38922563)
chr8 (471-550)||(2209755-2209834)
chr8 (441-572)||(14846526-14846656)
chr8 (470-520)||(13831072-13831121)
chr8 (410-480)||(39969913-39969983)
chr8 (471-572)||(10535463-10535563)
chr8 (445-561)||(17981402-17981518)
chr8 (410-570)||(43032853-43033013)
[»] scaffold0029 (1 HSPs)
scaffold0029 (447-577)||(40988-41118)
[»] scaffold0011 (2 HSPs)
scaffold0011 (411-551)||(224287-224427)
scaffold0011 (447-520)||(186519-186591)
[»] scaffold0209 (1 HSPs)
scaffold0209 (410-572)||(12524-12684)
[»] scaffold0223 (1 HSPs)
scaffold0223 (447-549)||(16851-16953)
[»] scaffold0005 (2 HSPs)
scaffold0005 (457-583)||(271119-271245)
scaffold0005 (447-545)||(249340-249438)
[»] scaffold0170 (1 HSPs)
scaffold0170 (441-550)||(9816-9925)
[»] scaffold0050 (1 HSPs)
scaffold0050 (470-550)||(72604-72683)
[»] scaffold0002 (2 HSPs)
scaffold0002 (447-551)||(540-644)
scaffold0002 (472-564)||(319379-319471)
[»] scaffold0016 (1 HSPs)
scaffold0016 (526-579)||(8824-8877)
[»] scaffold0004 (1 HSPs)
scaffold0004 (447-551)||(95016-95118)
[»] scaffold0006 (1 HSPs)
scaffold0006 (414-572)||(68466-68621)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-126; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 26922958 - 26923219
Alignment:
Q  1 attcaccacacacgtgaaattagacaccacatcttcatcaataatctttagacattatgtatatatacgtgtccccttgtttatctgtttttaacatcca 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  26922958 attcaccacacaggtgaaattagacaccacatcttcatcaataatctttagacattatgtatatatacgtgttcccttgtttatatgtttttaacatcca 26923057  T
Q  101 atttttcatcaaatattgtagaactcttatatcattttcaccgccattgacacttacatcaacgagacatgttgttgaccaccattgtcagagagacttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26923058 atttttcatcaaatattgtagaactcttatatcattttcaccgccattggcacttacatcaacgagacatgttgttgaccaacattgtcagagagacttt 26923157  T
Q  201 taccataaaaaaccgatcacttttactcaaacacaactgataccattattgagttgtattag 262  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||    
T  26923158 taccataaaaaaccgatcatttttactcaaacacaactaataccattattgagtcgtattag 26923219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 369 - 591
Target Start/End: Original strand, 26923216 - 26923441
Alignment:
Q  369 ttagaattgcaattcctaatcgttaatatatcannnnnnnn---gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgt 465  Q
    ||||||||||||||||||| |||||||||||||           |||||||||||||||| ||| ||| ||||||||||||| ||||| |||||||| ||    
T  26923216 ttagaattgcaattcctaaccgttaatatatcatctttttttttgctttcgcaccggtttctgacccaccaataatggacaattaatccgactcgtgtgt 26923315  T
Q  466 atatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctaga 565  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||| |||    
T  26923316 atatgcatgcgcactgatcaaacgttgttttccctaaaaatcgaatccgatattccttaaatacgtcattgaaaggagctccttgctaccggagcccaga 26923415  T
Q  566 caacttgtttgttaatatatgatttt 591  Q
    ||||||||||||||||||||||||||    
T  26923416 caacttgtttgttaatatatgatttt 26923441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 410 - 572
Target Start/End: Complemental strand, 13894034 - 13893872
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||| |||||| |||   ||| | ||||||| | |||||| ||| | ||||||||| ||| ||| |||||||  ||||| ||||| |    
T  13894034 gctttcgcaccggttttcgatccaccaaaggtgggcgactaatccggctcgtgtgtagaggcatgcgcattgaccaagcgttgttccccctggaaatcca 13893935  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||| ||||||  | | ||||| |||||||||||||||||| || |||||| | ||||||||    
T  13893934 acccggtattccccggacacgtccttggaaggagctccttgccactggagcccaaacaacttg 13893872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 457 - 551
Target Start/End: Complemental strand, 49543580 - 49543486
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    |||||||||| | |||||| |||||| |||||||||||  || ||| ||||||||||||||||||  | ||||||| ||||||||||||||||||    
T  49543580 ctcgtgcgtagaggcatgcacactgaccaaacgttgttccccatgagaatcgaacccgatattcccgggatacgtccttggaaggagctccttgc 49543486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 447 - 572
Target Start/End: Complemental strand, 29127990 - 29127865
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | ||||||||||||| |||  |||||| |||||| |||||||||||||||||||    ||||||| ||||||||| |||    
T  29127990 actaatccggctcatgcgtagaggcatgcgcactgaccaagtgttgttctccctggaaatcgaacccgatattccccagatacgtccttggaaggatctc 29127891  T
Q  547 cttgctaccggagcctagacaacttg 572  Q
    ||||| || |||||| | ||||||||    
T  29127890 cttgccactggagcccaaacaacttg 29127865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 411 - 572
Target Start/End: Complemental strand, 45877561 - 45877400
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||||||||||||||  || ||||||||  || || ||||||| | ||| |||||| | ||||| ||||||  |||  ||||||| ||||| ||||||||    
T  45877561 ctttcgcaccggtttccgacccatcaatggtgaacgactaatccggctcatgcgtagaggcatgtgcactggccaagtgttgtttcccctggaaatcgaa 45877462  T
Q  511 cccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    |||| ||||||  | ||||||| |||||||| ||||||||| || |||||| | ||||||||    
T  45877461 cccggtattccccggatacgtccttggaaggggctccttgccactggagcccaaacaacttg 45877400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 522
Target Start/End: Complemental strand, 23511675 - 23511563
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||| || |||||||   ||||| | ||||| ||||| |||||| | |||||||||||| |||||||||| |  || ||  ||||||    
T  23511675 gctttcgcaccggttttcgacccatcaaaggtggacgattaatccgactcatgcgtagaggcatgcgcactggtcaaacgttgctccccttgtgaatcga 23511576  T
Q  510 acccgatattcct 522  Q
    |||||||||||||    
T  23511575 acccgatattcct 23511563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 551
Target Start/End: Complemental strand, 6462494 - 6462379
Alignment:
Q  436 aataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtcttt 535  Q
    |||||||| | ||||||| | ||| |||||| | ||||||||||||  ||| ||||||| ||||||  ||||||||||| ||||||    ||||||| ||    
T  6462494 aataatggtcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttctccctgtgaatcgaacccggtattccccagatacgtcctt 6462395  T
Q  536 ggaaggagctccttgc 551  Q
    ||||||||||||||||    
T  6462394 ggaaggagctccttgc 6462379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 411 - 561
Target Start/End: Original strand, 29762155 - 29762305
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||||||||||||||  || ||| ||||  ||||| |||||||   ||| ||| || | ||||||||||||  |||  ||||||  |||||| ||||| |    
T  29762155 ctttcgcaccggtttccgacccaccaatggtggacgactaatccagctcatgcatagaggcatgcgcactggccaagtgttgttgcccctgagaatcgga 29762254  T
Q  511 cccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    |||||||||||  |||||| || |||||||||||||||||| || ||||||    
T  29762255 cccgatattccccgaatacatccttggaaggagctccttgccactggagcc 29762305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 410 - 572
Target Start/End: Complemental strand, 33251770 - 33251608
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||  ||||| || |||||||   ||||| ||||||| | ||| |||||| | |||||| |||||  |||||||||||  | | |  ||||||    
T  33251770 gctttcgcactcgttttcgacccatcaaatgtggacgactaatccggctcatgcgtagaggcatgcacactggccaaacgttgttcccaccgggaatcga 33251671  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||| ||||||   |||||||| ||||||||||||| |||| ||||||||| | ||||||||    
T  33251670 acccggtattcccctaatacgtccttggaaggagctcattgccaccggagcccaaacaacttg 33251608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 470 - 572
Target Start/End: Original strand, 51683013 - 51683115
Alignment:
Q  470 gcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaac 569  Q
    |||||||||||| |||| |||||||  |||||  ||||||||| | ||||||  | ||||||||||||||||||||||| || || |||||| | |||||    
T  51683013 gcatgcgcactggtcaagcgttgttccccctgggaatcgaacctggtattccccggatacgtctttggaaggagctcctcgccactggagcccaaacaac 51683112  T
Q  570 ttg 572  Q
    |||    
T  51683113 ttg 51683115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 561
Target Start/End: Complemental strand, 10040617 - 10040514
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccg 556  Q
    |||||||||| | ||||||||||||  ||| |||||||  |||||| ||||||||||||||||||  |  |||||| || ||||||||||||||| || |    
T  10040617 ctcgtgcgtagaggcatgcgcactggccaagcgttgttc-ccctgagaatcgaacccgatattccccgggtacgtccttagaaggagctccttgccactg 10040519  T
Q  557 gagcc 561  Q
    |||||    
T  10040518 gagcc 10040514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 548
Target Start/End: Complemental strand, 53649833 - 53649697
Alignment:
Q  412 tttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaac 511  Q
    ||||||||||||||  ||||||||||   || || ||||||| | ||| |||||| |  || ||||||||  |||  ||||||  |||||| ||||||||    
T  53649833 tttcgcaccggtttccgatccatcaaaggtgaacgactaatccggctcatgcgtagagacaggcgcactggccaagtgttgttcaccctgagaatcgaac 53649734  T
Q  512 ccgatattccttgaatacgtctttggaaggagctcct 548  Q
    ||| ||||||  ||||||||| |||||||||||||||    
T  53649733 ccggtattccccgaatacgtccttggaaggagctcct 53649697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 24506684 - 24506750
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccg 514  Q
    ||||||||||||| |||||| | ||||| |||||| |||| ||||| |||||||||||||||||||||    
T  24506684 actaatctgactcatgcgtagaggcatgtgcactggtcaagcgttg-tttccctgaaaatcgaacccg 24506750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 25295068 - 25294917
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||   | ||| ||||  ||||| ||||||| | ||| ||| || | ||||||||||||  |||  ||||||| ||| || |||| |    
T  25295068 gctttcgcaccggtttccaacccaccaatggtggacgactaatccggctcatgcatagaggcatgcgcactggccaagtgttgtttccccagagaatcaa 25294969  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||| ||||||  | ||||||| |||||||||||||||||| || ||||||    
T  25294968 acccggtattccccggatacgtccttggaaggagctccttgccactggagcc 25294917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 447 - 570
Target Start/End: Complemental strand, 49082895 - 49082772
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    |||||||||| ||||| ||| ||||||||||||||   || ||||||| ||||||  |||||||| || ||||||  | ||||||| || ||||||||||    
T  49082895 actaatctgattcgtgtgtagatgcatgcgcactggctaagcgttgttctccctgggaatcgaactcggtattccccggatacgtccttagaaggagctc 49082796  T
Q  547 cttgctaccggagcctagacaact 570  Q
    | ||| || |||||| | ||||||    
T  49082795 cctgccactggagcccaaacaact 49082772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 494
Target Start/End: Original strand, 35923628 - 35923706
Alignment:
Q  416 gcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgtt 494  Q
    ||||||||||| ||||||||||  |||||| ||||||  ||||||||| || | ||||||||||||  |||||||||||    
T  35923628 gcaccggttttcgatccatcaaagatggacgactaattcgactcgtgcttagaggcatgcgcactggccaaacgttgtt 35923706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 504 - 561
Target Start/End: Complemental strand, 39849086 - 39849029
Alignment:
Q  504 aatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    |||||||||||| ||||| ||| |||||| |||||||||||||||||| || ||||||    
T  39849086 aatcgaacccgaaattccctgagtacgtccttggaaggagctccttgccactggagcc 39849029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 521
Target Start/End: Original strand, 51060280 - 51060391
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| ||||  ||||| |||||||    || |||||| | ||||||||||||| |||  ||||||  |||||| ||||||    
T  51060280 gctttcgcaccggtttccgacccaccaatggtggacgactaatccagttcatgcgtagaggcatgcgcactgaccaagtgttgttccccctgagaatcga 51060379  T
Q  510 acccgatattcc 521  Q
    ||||||||||||    
T  51060380 acccgatattcc 51060391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 551
Target Start/End: Original strand, 52011061 - 52011108
Alignment:
Q  504 aatcgaacccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||||||||||||||||| || |||||| |||||||||| |||||||    
T  52011061 aatcgaacccgatattcctggagtacgtccttggaaggagttccttgc 52011108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 571
Target Start/End: Original strand, 3136724 - 3136853
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||| ||||||| ||||| |||||| | ||||||||||||  |||  ||||||  |||||||||||||| ||| ||||||  |  |||||| ||| |||    
T  3136724 tggacgactaatccgactcatgcgtagaggcatgcgcactgcccaagtgttgttc-ccctgaaaatcgaatccggtattccccgggtacgtccttgaaag 3136822  T
Q  541 gagctccttgctaccggagcctagacaactt 571  Q
    ||||| ||||| || |||||| | |||||||    
T  3136823 gagcttcttgccacgggagcccaaacaactt 3136853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 572
Target Start/End: Complemental strand, 15320294 - 15320132
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||||||||||||| ||| ||| |||   ||| | ||||||| | |||||||||| | |||||| |||||  ||| | |||||   |||  |||||||    
T  15320294 gctttcgcaccggtttctgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcacactggccaatcattgttcctcctcgaaatcga 15320195  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||| ||||||  |  |||||| |||||||||||||||||| || |||| | | ||||||||    
T  15320194 acccggtattccccgggtacgtccttggaaggagctccttgccactggagtccaaacaacttg 15320132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 513
Target Start/End: Original strand, 50405639 - 50405705
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaaccc 513  Q
    ||||||| |||||||||||| | |||||||||||| |||| |||||||| ||||   ||||||||||    
T  50405639 actaatccgactcgtgcgtagaggcatgcgcactggtcaagcgttgtttcccctcggaatcgaaccc 50405705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 519
Target Start/End: Complemental strand, 54237556 - 54237447
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || |||  |||  ||||| ||| ||| | ||| |||||| |  |||||||||||| |||  |||||| ||||||||||||||    
T  54237556 gctttcgcaccggtttccgacccactaatggtggacgacttatccggctcatgcgtagagacatgcgcactgaccaagtgttgttctccctgaaaatcga 54237457  T
Q  510 acccgatatt 519  Q
     |||||||||    
T  54237456 ccccgatatt 54237447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 546
Target Start/End: Original strand, 26362003 - 26362100
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | |||||||||| | |||||| |||||| |||||||||||  || ||  |||| |||| ||||||||| ||  ||||| |||||||||||||    
T  26362003 actaatccggctcgtgcgtagaggcatgcacactgaccaaacgttgttccccttgggaatcaaacctgatattcctcga--acgtccttggaaggagctc 26362100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 546
Target Start/End: Complemental strand, 47219252 - 47219116
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || |||||||   ||||| ||||||| | ||| |||||| | |||||||||||   ||| |||||||| || ||  ||||||    
T  47219252 gctttcgcaccggtttccgacccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactagccaagcgttgtttcccttgggaatcga 47219153  T
Q  510 acccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||| | ||||||  | ||||||| |||||| ||||||    
T  47219152 acctggtattccccggatacgtccttggaaagagctc 47219116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 410 - 576
Target Start/End: Original strand, 13036002 - 13036168
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| ||||| ||||| ||||||||| ||| |||||| | ||||||||||||  |||  ||||||  |||||||||||||    
T  13036002 gctttcgcaccggtttccgacccaccaatagtggacgactaatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgaaaatcga 13036101  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttgtttg 576  Q
    ||||||||||||  ||||||||| |||||||||||||||||| || |||||| |  |||||||||||    
T  13036102 acccgatattccccgaatacgtccttggaaggagctccttgccactggagcccaagcaacttgtttg 13036168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 410 - 572
Target Start/End: Original strand, 14107356 - 14107518
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || |||  |||||||| | ||||||| | ||| |||||| | ||||| |||||| |||| |||||||   ||||  ||||||    
T  14107356 gctttcgcaccggtttccgacccactaataatgggcgactaatccggctcatgcgtagaggcatgtgcactggtcaagcgttgttcctcctgggaatcga 14107455  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||| ||||||  |||||||||||||||||||||||||||| || |||||| | ||||||||    
T  14107456 acccggtattccccgaatacgtctttggaaggagctccttgccactggagcccaaacaacttg 14107518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 470 - 549
Target Start/End: Complemental strand, 32048503 - 32048424
Alignment:
Q  470 gcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctcctt 549  Q
    |||||| |||||| ||||||||||| ||||||||||||||| | ||||||||| || ||| || ||||||||||||||||    
T  32048503 gcatgcacactgaccaaacgttgttctccctgaaaatcgaatctgatattcctcgagtacatccttggaaggagctcctt 32048424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 410 - 516
Target Start/End: Complemental strand, 5029929 - 5029823
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||| ||||  || |||||||  |||| | |||||||  |||| |||||| | ||||||||||||| ||||||||||| ||||||| ||||||    
T  5029929 gctttcgcaccagtttccgacccatcaaagatgggcgactaatccaactcatgcgtagaggcatgcgcactgaccaaacgttgttctccctgagaatcga 5029830  T
Q  510 acccgat 516  Q
    |||||||    
T  5029829 acccgat 5029823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 551
Target Start/End: Complemental strand, 3601196 - 3601055
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| |||   ||||| ||||||| | |||||| ||||| ||||||||||||  ||| |||||||  |||||| ||||||    
T  3601196 gctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgtgtataggcatgcgcactggccaagcgttgttccccctgagaatcga 3601097  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    | ||| ||||||  |||||||| ||||||| |||||| ||||    
T  3601096 aaccggtattccccgaatacgtatttggaaagagctctttgc 3601055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 561
Target Start/End: Original strand, 10311467 - 10311618
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||| ||||| || ||| ||||  ||  | |||||||| ||||||||||| |  |||||||||||  ||| |||||||  || |||  |||||    
T  10311467 gctttcgcaccagttttcgacccaccaatggtgagcgactaatctaactcgtgcgtagagacatgcgcactggccaagcgttgttccccttgaggatcga 10311566  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||| ||||||  | ||||||  ||||||||||||||||||||| ||||||    
T  10311567 acccggtattccccggatacgttcttggaaggagctccttgctactggagcc 10311618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 551
Target Start/End: Original strand, 29444793 - 29444904
Alignment:
Q  440 atggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaa 539  Q
    |||||||||||||| | ||| |||||| | ||||||||||||  ||| |||||||  ||||  |||||||||||| ||| ||  |  |||||||||||||    
T  29444793 atggacaactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctagaaatcgaacccggtatcccccgggtacgtctttggaa 29444892  T
Q  540 ggagctccttgc 551  Q
    ||||||||||||    
T  29444893 ggagctccttgc 29444904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 416 - 561
Target Start/End: Original strand, 2271307 - 2271450
Alignment:
Q  416 gcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccga 515  Q
    |||| ||||| ||| |||||||   ||||| ||||||| | |||||||||| |  |||||||||||   || ||||||| ||  ||| |||||||||||     
T  2271307 gcactggtttctgacccatcaaaggtggacgactaatccggctcgtgcgtagagacatgcgcactggctaagcgttgttctc--tgagaatcgaacccgg 2271404  T
Q  516 tattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||||  ||||||||| |||||||||||||||||| || ||||||    
T  2271405 tattccccgaatacgtccttggaaggagctccttgccactggagcc 2271450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 441 - 495
Target Start/End: Complemental strand, 11142684 - 11142630
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttt 495  Q
    ||||||||||||||||||| |||||| | |||||||||||| |||||||||||||    
T  11142684 tggacaactaatctgactcatgcgtagaggcatgcgcactggtcaaacgttgttt 11142630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 4596171 - 4596106
Alignment:
Q  484 caaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctcctt 549  Q
    |||||||||||  |||||||||||||||| ||||||||  ||||||||| ||| ||||||||||||    
T  4596171 caaacgttgttccccctgaaaatcgaacctgatattccccgaatacgtccttgaaaggagctcctt 4596106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 6606095 - 6606236
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| ||||  ||||| ||||||| | ||| |||||| | |||||  |||||  |||  ||||||  |||||| ||||||    
T  6606095 gctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgtacactggccaagtgttgttccccctgagaatcga 6606194  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||| ||||||  | ||||||| ||||||||||||||||||    
T  6606195 acccggtattccccggatacgtccttggaaggagctccttgc 6606236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 421 - 532
Target Start/End: Complemental strand, 8888983 - 8888872
Alignment:
Q  421 ggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattc 520  Q
    |||||| ||||||||||   ||||| ||||||| ||||| |||||| | | ||||||||||  |||||||||||| || | |||||||||  ||||||||    
T  8888983 ggttttcgatccatcaaaggtggacgactaatccgactcatgcgtagaggtatgcgcactggccaaacgttgtttcccttaaaaatcgaattcgatattc 8888884  T
Q  521 cttgaatacgtc 532  Q
    | || |||||||    
T  8888883 cctggatacgtc 8888872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 13469045 - 13468894
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||   | ||| ||||  ||| | ||||||||| |||||||||| | ||||| ||||||| ||| |||||||  ||||   ||| ||    
T  13469045 gctttcgcaccggtttccaacccaccaatggtgggcgactaatctggctcgtgcgtagaggcatgtgcactgaccaatcgttgttccccctaggaattga 13468946  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||| | ||||||  | ||||||| |||||||||||||||||| ||| |||||    
T  13468945 acctggtattccccggatacgtccttggaaggagctccttgccaccagagcc 13468894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 461 - 572
Target Start/End: Original strand, 29333188 - 29333298
Alignment:
Q  461 tgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagc 560  Q
    |||||| | ||||||||||||  |||||||||||  ||||| |||||||||||| |||||| ||  |||||| ||||||||||||| |||| ||  ||||    
T  29333188 tgcgtagaggcatgcgcactggccaaacgttgttc-ccctggaaatcgaacccggtattccctgggtacgtccttggaaggagctcattgccactagagc 29333286  T
Q  561 ctagacaacttg 572  Q
    | | ||||||||    
T  29333287 ccaaacaacttg 29333298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 561
Target Start/End: Complemental strand, 21898723 - 21898609
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | ||||||||||||  ||| |||||||   ||||  ||||||||||| ||||||  | ||||||| |||||||||||||    
T  21898723 actaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccggatacgtccttggaaggagctc 21898624  T
Q  547 cttgctaccggagcc 561  Q
    ||||| || ||||||    
T  21898623 cttgccactggagcc 21898609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 30788851 - 30788990
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| |||   ||| | ||||||| | ||||||| || | ||||||||||||  |||||||||||  || ||| |||| |    
T  30788851 gctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcctagaggcatgcgcactggccaaacgttgtt--ccatgagaatcaa 30788948  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||||||||||  | |||| || ||||||||||||||||||    
T  30788949 acccgatattccccggatacatccttggaaggagctccttgc 30788990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 411 - 520
Target Start/End: Complemental strand, 13391397 - 13391289
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||| ||||||||||| || |||| ||  |||| | ||||||| | |||||||||| | ||||||||||||  ||||| ||| || ||||||||||||||    
T  13391397 cttttgcaccggttttcgacccattaaatatgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaaacattg-ttcccctgaaaatcgaa 13391299  T
Q  511 cccgatattc 520  Q
     |||||||||    
T  13391298 tccgatattc 13391289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 447 - 572
Target Start/End: Original strand, 19230594 - 19230717
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | |||||||||| | ||||||  ||||| ||| |||||||  || ||||||||||| ||| ||||||  || |||||| |||||||||||||    
T  19230594 actaatccggctcgtgcgtagaggcatgcatactgaccaagcgttgttc-ccttgaaaatcgaatccggtattccc-gagtacgtccttggaaggagctc 19230691  T
Q  547 cttgctaccggagcctagacaacttg 572  Q
    ||||| || |||||| | ||||||||    
T  19230692 cttgccactggagcccaaacaacttg 19230717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 572
Target Start/End: Original strand, 3030710 - 3030778
Alignment:
Q  504 aatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||||||||||||||||   |||||||| |||||| ||||||||||| || |||||| | ||||||||    
T  3030710 aatcgaacccgatattcccgaaatacgtccttggaatgagctccttgccactggagcccaaacaacttg 3030778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 551
Target Start/End: Complemental strand, 12606505 - 12606401
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | |||||||||| | ||||||||||||  |||||||||||  ||||| |||||||| | | ||||||  | ||||||  |||||||||||||    
T  12606505 actaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgttccccctggaaatcgaatctggtattccccggatacgttcttggaaggagctc 12606406  T
Q  547 cttgc 551  Q
     ||||    
T  12606405 attgc 12606401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 557
Target Start/End: Complemental strand, 12635926 - 12635779
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| ||||| ||| | ||||||| | || ||||||| | |||||||||||   ||| |||||||| |||||  |||| |    
T  12635926 gctttcgcaccggtttccgacccaccaatagtgggcgactaatccggcttgtgcgtagaggcatgcgcactagccaagcgttgtttcccctgggaatcaa 12635827  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccgg 557  Q
    ||| | ||||||  | ||||||| |||||||||||  ||||| |||||    
T  12635826 acctggtattccccggatacgtccttggaaggagcatcttgccaccgg 12635779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 550
Target Start/End: Original strand, 9366459 - 9366561
Alignment:
Q  448 ctaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctcc 547  Q
    |||||| | |||||||||| | ||||||||||||  ||| |||| ||  |||| ||||||||||| ||||||||   | ||| || ||||||||||||||    
T  9366459 ctaatccggctcgtgcgtagaggcatgcgcactggccaagcgttattccccctaaaaatcgaacctgatattccccaagtacatccttggaaggagctcc 9366558  T
Q  548 ttg 550  Q
    |||    
T  9366559 ttg 9366561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 551
Target Start/End: Original strand, 34954648 - 34954758
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||| ||||||||| ||| |||||| | | ||| ||||||  |||||||||||  |||||| ||||||||| | ||||||     |||||| |||||||    
T  34954648 tggacgactaatctggctcatgcgtagaggtatgtgcactggccaaacgttgttccccctgagaatcgaacctggtattccccaggtacgtccttggaag 34954747  T
Q  541 gagctccttgc 551  Q
    |||||||||||    
T  34954748 gagctccttgc 34954758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 572
Target Start/End: Complemental strand, 8938822 - 8938661
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||||||||||||||  || |||||||   ||||| ||||||  | ||| |||||| |||| ||||||||| ||||  ||||||   ||||  |||||||    
T  8938822 ctttcgcaccggtttccgacccatcaaaggtggacgactaattcggctcatgcgtagatgcttgcgcactggtcaagtgttgttcctcctgggaatcgaa 8938723  T
Q  511 cccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||   ||||||  | ||| |||||||||||||||||||||  || |||||| | ||||||||    
T  8938722 ccaagtattccccggatatgtctttggaaggagctccttgtcactggagcccaaacaacttg 8938661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 549
Target Start/End: Original strand, 32157167 - 32157304
Alignment:
Q  412 tttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaac 511  Q
    |||| ||||||||| ||||||| |||  |||||  ||||||||| ||| |||||| | | |||||||||| ||||  ||||||  | || |||||  |||    
T  32157167 tttcacaccggtttctgatccaccaaagatggatgactaatctggctcatgcgtagaggtatgcgcactggtcaagtgttgttccctctaaaaattaaac 32157266  T
Q  512 ccgatattccttgaatacgtctttggaaggagctcctt 549  Q
    | |||||||| | |||| ||| || |||||||||||||    
T  32157267 ctgatattccctaaatatgtccttagaaggagctcctt 32157304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 572
Target Start/End: Original strand, 9179828 - 9179896
Alignment:
Q  504 aatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||||||||| |||||| ||  |||||| |||||| ||||||||||| || |||||| | ||||||||    
T  9179828 aatcgaacccggtattccctgggtacgtccttggaatgagctccttgccactggagcccaaacaacttg 9179896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 532
Target Start/End: Original strand, 33859355 - 33859439
Alignment:
Q  448 ctaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtc 532  Q
    |||||| ||||  |||||| | ||||||||||||  |||||||||||  |||| ||||||||||||| |||| | ||| ||||||    
T  33859355 ctaatccgactaatgcgtagaggcatgcgcactgggcaaacgttgttccccctaaaaatcgaacccggtatttcctgagtacgtc 33859439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 1797571 - 1797420
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||| ||||||||||| ||||||||||  |||||| |||| || | |||||||||| |  |||||||||||  ||| |||||||| |||||  ||||||    
T  1797571 gcttttgcaccggttttcgatccatcaaagatggacgactagtccggctcgtgcgtagagacatgcgcactggccaagcgttgtttcccctgggaatcga 1797472  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||| ||||||| | ||||||| |||||||||||||||||| || ||||||    
T  1797471 acccggtattcctcggatacgtccttggaaggagctccttgccactggagcc 1797420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 411 - 561
Target Start/End: Complemental strand, 22573922 - 22573773
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    ||||||||||||||||  | |||||||| |||||| | ||||| | ||| |||||| | |||||||||||| ||||| ||||||  ||||||||||||||    
T  22573922 ctttcgcaccggttttcaacccatcaatgatggacgattaatccggctcatgcgtaaaggcatgcgcactggtcaaatgttgttc-ccctgaaaatcgaa 22573824  T
Q  511 cccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    |||||||||||   ||||  |||||||||| |||| |||||||| ||||||    
T  22573823 cccgatattcccccaatatatctttggaagaagcttcttgctactggagcc 22573773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 411 - 551
Target Start/End: Complemental strand, 3353534 - 3353395
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    ||||||||||||||| |||||||||||   ||||| ||||||| | |||||||||| | ||||||||||||  |||| |||| ||||||||| ||||||     
T  3353534 ctttcgcaccggtttctgatccatcaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaaatgttg-tttccctgagaatcgat 3353436  T
Q  511 cccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||||||||| |  ||||||| ||  || |||||||||||    
T  3353435 cccgatattccctagatacgtccttataatgagctccttgc 3353395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 451 - 551
Target Start/End: Complemental strand, 44336963 - 44336863
Alignment:
Q  451 atctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttg 550  Q
    |||||||||||||||| | ||||||||||||| |||||||| |||| |||| ||||||||| ||||||||| |  ||||||| |||||| |||||| |||    
T  44336963 atctgactcgtgcgtagaggcatgcgcactgaccaaacgttatttttcctggaaatcgaactcgatattccctagatacgtccttggaatgagctctttg 44336864  T
Q  551 c 551  Q
    |    
T  44336863 c 44336863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 457 - 572
Target Start/End: Original strand, 42210307 - 42210422
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccg 556  Q
    |||||||||| | ||||||||||||  |||||||||||||| |||  ||||||| ||| ||||||| | ||||||| |||||| ||||||||||| || |    
T  42210307 ctcgtgcgtagaggcatgcgcactggccaaacgttgttttcactgggaatcgaagccggtattcctcggatacgtccttggaaagagctccttgccactg 42210406  T
Q  557 gagcctagacaacttg 572  Q
    ||| |||  |||||||    
T  42210407 gagtctaagcaacttg 42210422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 410 - 548
Target Start/End: Complemental strand, 22974078 - 22973940
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||||| ||||||| ||| ||| |||   ||||| ||||||||| ||| |||||| | |||||| |||||  ||| |||||||  |||||| ||||||    
T  22974078 gctttcgcgccggtttctgacccaccaaaggtggacgactaatctggctcatgcgtagacgcatgcacactggccaagcgttgttccccctgagaatcga 22973979  T
Q  510 acccgatattccttgaatacgtctttggaaggagctcct 548  Q
    ||||| ||||||  || |||||| |||||||||||||||    
T  22973978 acccggtattccccgagtacgtccttggaaggagctcct 22973940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 410 - 572
Target Start/End: Complemental strand, 34659337 - 34659175
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||| ||  || ||||  ||| | ||||||| | |||||||||| | |||||||||||| |||| |||||||  || ||| ||||||    
T  34659337 gctttcgcaccggttttcgacacaccaatggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggtcaagcgttgttccccttgagaatcga 34659238  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||| ||||||  |  ||| ||  ||||||||||||||||| || |||||| | ||||||||    
T  34659237 acccggtattccccgggtacatccctggaaggagctccttgccactggagcccaaacaacttg 34659175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 447 - 572
Target Start/End: Original strand, 26423322 - 26423447
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||||| |||||||||| | ||| | ||||||  ||| |||||||| |||||  ||||||||||| |||||||||  |||||| |||||||||| |     
T  26423322 actaatctggctcgtgcgtagaggcaggtgcactggccaagcgttgtttcccctgggaatcgaacccggtattccttgggtacgtccttggaaggagttt 26423421  T
Q  547 cttgctaccggagcctagacaacttg 572  Q
    ||||| || |||||| | ||||||||    
T  26423422 cttgccactggagcccaaacaacttg 26423447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 43861970 - 43862111
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||| |||||| |||   || |  ||||||| | ||| |||||| | ||||||||||||  |||||||||||  |||||  ||||||    
T  43861970 gctttcgcaccggttttcgatccaccaaaggtgaatgactaatccggctcatgcgtagaggcatgcgcactggccaaacgttgttccccctgggaatcga 43862069  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||| ||||||    |||||||||||||| |||||||||||    
T  43862070 acccggtattccccagatacgtctttggaaagagctccttgc 43862111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 48804794 - 48804643
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| ||||  ||||| ||||||| | ||| |||||| | ||||||||||||  |||  ||||||  || ||  ||||||    
T  48804794 gctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccttgggaatcga 48804695  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||| ||||||  | ||||||| |||||||||||||||||| || ||||||    
T  48804694 acccggtattccccggatacgtccttggaaggagctccttgccactggagcc 48804643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 447 - 546
Target Start/End: Complemental strand, 365214 - 365115
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | |||||||||||||| || |||||||   ||||  ||||||||||| ||||||| | |||||| ||||||||||||||    
T  365214 actaatcaggctcatgcgtagaggcatgcgcactgattaagcgttgttcctcctgtgaatcgaacccggtattcctcggatacgtttttggaaggagctc 365115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 441 - 572
Target Start/End: Original strand, 17748411 - 17748542
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||| ||||||| | ||||| |||| | ||||||||||||  ||| |||||||  |||||  ||||||||||| ||||||  ||||||||| |||||||    
T  17748411 tggacgactaatccggctcgtacgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacccggtattccccgaatacgtccttggaag 17748510  T
Q  541 gagctccttgctaccggagcctagacaacttg 572  Q
     |||| ||||| ||  ||||| | ||||||||    
T  17748511 aagctgcttgccactagagcccaaacaacttg 17748542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 441 - 563
Target Start/End: Original strand, 41267953 - 41268076
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccc-tgaaaatcgaacccgatattccttgaatacgtctttggaa 539  Q
    ||||| |||||||| |||| |||||| | |||||| |||| ||||| |||| || |||| | |||||||||| |||||||| | ||||||||  || |||    
T  41267953 tggacgactaatctaactcatgcgtagaggcatgcacactaatcaagcgttattctcccctaaaaatcgaactcgatattcttcgaatacgttctttgaa 41268052  T
Q  540 ggagctccttgctaccggagccta 563  Q
    | |||||||| | |||||||||||    
T  41268053 gaagctccttaccaccggagccta 41268076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 43925623 - 43925472
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||| || |||||| |||||||||||   |  ||||||||||   ||| |||||| | ||||||||||||| |||  ||||||  |||||  ||||||    
T  43925623 gctttcacatcggtttctgatccatcaaaggtaaacaactaatccagctcatgcgtagaggcatgcgcactgaccaagtgttgttccccctgggaatcga 43925524  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||| ||||||  |  |||||| |||||||||||||||||| || ||||||    
T  43925523 acccggtattccccgggtacgtccttggaaggagctccttgccactggagcc 43925472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 480
Target Start/End: Original strand, 21190778 - 21190848
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcact 480  Q
    ||||||||||||||||| || ||| || | |||| | |||||||||||||||||||| | |||||||||||    
T  21190778 gctttcgcaccggttttcgacccaccattgatgggcgactaatctgactcgtgcgtagaggcatgcgcact 21190848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 559
Target Start/End: Complemental strand, 23824001 - 23823911
Alignment:
Q  469 tgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggag 559  Q
    |||||||||||||  |||||||||||| || ||| |||| || | ||||||||| | ||||||| || ||||||||||||| | |||||||    
T  23824001 tgcatgcgcactggccaaacgttgtttcccttgagaatcaaatctgatattcctcggatacgtccttagaaggagctccttaccaccggag 23823911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 572
Target Start/End: Original strand, 4228759 - 4228911
Alignment:
Q  417 caccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgat 516  Q
    ||||| |||| || ||||||||  ||| | ||||||| | ||| ||||||   ||||| ||||||  |||||||||||   |||| |||||||||| | |    
T  4228759 caccgattttcgacccatcaatggtgggcgactaatccggctcatgcgtaggggcatgtgcactggccaaacgttgtt---cctggaaatcgaacctggt 4228855  T
Q  517 attccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    |||||| | ||||||| ||||||||||||||||||  | |||||| | ||||||||    
T  4228856 attcctcggatacgtccttggaaggagctccttgccgctggagcccaaacaacttg 4228911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 410 - 571
Target Start/End: Complemental strand, 23658290 - 23658130
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||| |||| ||||| ||| ||| |||  |||||| ||||||| | |||||| ||| | |||||| |||||  ||| |||||||  ||||| |||||||    
T  23658290 gcttttgcacaggtttctgacccaccaaagatggacgactaatccggctcgtgtgtagaggcatgcacactggccaagcgttgttccccctggaaatcga 23658191  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaactt 571  Q
    ||  |||||||| ||  |||||| ||| |||||||||||||| || |||||| | |||||||    
T  23658190 actggatattccctgggtacgtccttg-aaggagctccttgccactggagcccaaacaactt 23658130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 551
Target Start/End: Complemental strand, 45448044 - 45447940
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    |||||||||||| ||| ||| | | |||||||||   ||| ||||||| |||||| |||||||||| | |||| || |  |||||| |||||||||||||    
T  45448044 actaatctgactagtgtgtagagggatgcgcactagccaagcgttgttctccctggaaatcgaacctggtatttctcgggtacgtccttggaaggagctc 45447945  T
Q  547 cttgc 551  Q
    |||||    
T  45447944 cttgc 45447940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 561
Target Start/End: Complemental strand, 9685762 - 9685699
Alignment:
Q  498 cctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||| ||||||||||||||||||  | ||||||  |||||||||||||||||| || ||||||    
T  9685762 cctgagaatcgaacccgatattccccggatacgtgcttggaaggagctccttgccactggagcc 9685699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 10047874 - 10048015
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaat-ctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcg 508  Q
    ||||||||||||||||  || ||| ||||  ||||| |||||| ||| ||| |||||| | || |||||||||  |||  ||||||  |||||  |||||    
T  10047874 gctttcgcaccggtttccgacccaccaatggtggacgactaattctg-ctcatgcgtagaggcctgcgcactggccaagtgttgttccccctgggaatcg 10047972  T
Q  509 aacccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    |||||| ||||||  | ||||||| ||||||||||||||||||    
T  10047973 aacccggtattccccggatacgtccttggaaggagctccttgc 10048015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 571
Target Start/End: Complemental strand, 42032176 - 42032046
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||||||||||  | ||| |||||| ||| ||| ||||||  |||||||||||  || ||  ||||||||| | ||||||  |  |||||| |||||||    
T  42032176 tggacaactaattcggctcatgcgtagatgtatgtgcactggccaaacgttgttccccgtgggaatcgaaccaggtattccccgggtacgtccttggaag 42032077  T
Q  541 gagctccttgctaccggagcctagacaactt 571  Q
    ||||| |||||||| |||||| | |||||||    
T  42032076 gagcttcttgctactggagcccaaacaactt 42032046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 549
Target Start/End: Original strand, 48224766 - 48224867
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    |||||| |||||| | |||| || |||||||||||||||| ||||| || || || |||| |||| ||||||||| || ||||||| |||||| || |||    
T  48224766 actaatttgactcatacgtagatacatgcgcactgatcaagcgttg-ttcccatggaaattgaactcgatattccctggatacgtccttggaaagaactc 48224864  T
Q  547 ctt 549  Q
    |||    
T  48224865 ctt 48224867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 543
Target Start/End: Complemental strand, 14535398 - 14535269
Alignment:
Q  414 tcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaaccc 513  Q
    ||||||| |||| ||| ||||||||  ||| | |||||||   |||||||||| | |||||| |||||  |||  |||||| |||||||||||  |||||    
T  14535398 tcgcaccagtttctgacccatcaatggtgggcgactaatccagctcgtgcgtagaggcatgcacactggccaagtgttgttctccctgaaaatgaaaccc 14535299  T
Q  514 gatattccttgaatacgtctttggaaggag 543  Q
    | ||||||  || |||||| ||||||||||    
T  14535298 ggtattcccggagtacgtccttggaaggag 14535269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 501
Target Start/End: Complemental strand, 20097282 - 20097209
Alignment:
Q  428 gatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctg 501  Q
    ||||||||||  |||||| |||||||| ||||||||||| | ||||| | | ||||||||| ||||| ||||||    
T  20097282 gatccatcaaggatggacgactaatctaactcgtgcgtagaggcatgtgtattgatcaaacattgttctccctg 20097209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 572
Target Start/End: Original strand, 22268088 - 22268189
Alignment:
Q  471 catgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaact 570  Q
    |||||||||||  |||| ||||||  |||||  ||||||||||| ||||||   | |||||| |||||| ||||||||||| || |||||| | ||||||    
T  22268088 catgcgcactggccaaatgttgttccccctgggaatcgaacccggtattccccaagtacgtccttggaatgagctccttgccactggagcccaaacaact 22268187  T
Q  571 tg 572  Q
    ||    
T  22268188 tg 22268189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 36619252 - 36619393
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||| ||| ||||||||| ||| ||||  ||||| ||||||| | ||| |||||| | |||||| |||||  |||  ||||||  |||||  ||||||    
T  36619252 gctttcacactggtttttgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcacactggacaagtgttgttccccctgggaatcga 36619351  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||| ||||||   |||||||| ||| |||||| |||||||    
T  36619352 acccggtattccccaaatacgtccttgcaaggagttccttgc 36619393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 550
Target Start/End: Complemental strand, 37514985 - 37514892
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttg 550  Q
    |||||||||| |  |||||||||||| |||||||||||  | |||||||||||||||  ||||||  |  || ||| |||||||||||| ||||    
T  37514985 ctcgtgcgtagagacatgcgcactgaccaaacgttgttcccactgaaaatcgaacccagtattccccgggtatgtccttggaaggagctacttg 37514892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 572
Target Start/End: Original strand, 5039510 - 5039578
Alignment:
Q  504 aatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    |||||||| || ||||||  |||||| ||| ||||||||||||||||| || |||||| | ||||||||    
T  5039510 aatcgaactcggtattccccgaatacatctatggaaggagctccttgccactggagcccaaacaacttg 5039578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 29151991 - 29151939
Alignment:
Q  470 gcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattcct 522  Q
    |||||||||||| |||||||||||| | ||||  ||||||||||| |||||||    
T  29151991 gcatgcgcactggtcaaacgttgttcttcctgggaatcgaacccggtattcct 29151939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 550
Target Start/End: Original strand, 44961636 - 44961776
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || |||||||    ||| |||||||||||||||| |||| |  |||||| |||| |||| | ||||   |||| ||||| ||    
T  44961636 gctttcgcaccggtttccgacccatcaaaggcggataactaatctgactcgtacgtagagacatgcgtactggtcaagcattgtcccccctaaaaattga 44961735  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttg 550  Q
    | | |||||| || | ||||||| ||| |||||||||||||    
T  44961736 atctgatatttctcggatacgtccttgaaaggagctccttg 44961776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 441 - 545
Target Start/End: Complemental strand, 21429383 - 21429279
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||| |||| ||||||||||||||| | ||||||||||||   ||||||||||  |||| ||||||||||||||||||||| | |||||||||||||||    
T  21429383 tggacgactagtctgactcgtgcgtagaggcatgcgcactggctaaacgttgttccccctaaaaatcgaacccgatattcctcggatacgtctttggaag 21429284  T
Q  541 gagct 545  Q
    |||||    
T  21429283 gagct 21429279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 24166563 - 24166412
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  ||||||||||   |||   ||||||||| |||||||||| | ||||||||||||  |||||||||||| || ||  ||||||    
T  24166563 gctttcgcaccggtttccgatccatcaaaggtgggtgactaatctggctcgtgcgtagaggcatgcgcactggccaaacgttgtttcccttgggaatcga 24166464  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||  ||||||  || |||||| |||||||||||||||||| || ||||||    
T  24166463 acccagtattccccgagtacgtccttggaaggagctccttgccactggagcc 24166412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 410 - 559
Target Start/End: Original strand, 36145213 - 36145362
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  ||| ||||||   ||||| ||||||| | ||| || ||| | ||||||||||||||||| |||||||| |||||  ||||||    
T  36145213 gctttcgcaccggtttccgattcatcaaaggtggacgactaatccggctcatgtgtagaggcatgcgcactgatcaagcgttgtttcccctgggaatcga 36145312  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggag 559  Q
    ||||| ||||||  |  |||||| |||||| ||||||||||| |||||||    
T  36145313 acccggtattccccgggtacgtccttggaatgagctccttgccaccggag 36145362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 410 - 571
Target Start/End: Complemental strand, 10541128 - 10540968
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  ||||||||||   ||| | | ||||||| |||||||||| | |||||| |||||  ||| |||||||| ||||| |||||||    
T  10541128 gctttcgcaccggtttccgatccatcaaaggtgg-cgattaatctggctcgtgcgtagaggcatgcacactggccaagcgttgtttcccctggaaatcga 10541030  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaactt 571  Q
    ||||||||||||||   ||||| ||||||| || |||||| |||| ||| || | |||||||    
T  10541029 acccgatattccttaggtacgtttttggaatgaactccttactactggaacccaaacaactt 10540968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 410 - 551
Target Start/End: Complemental strand, 20128422 - 20128281
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||||||||||||| ||| ||| ||||  ||||| ||||||||  |||||||||| | ||||||||||||  ||| | |||||  |||||| ||||||    
T  20128422 gctttcgcaccggtttctgacccaccaatggtggacgactaatctagctcgtgcgtaaaggcatgcgcactggccaagcattgttccccctgagaatcga 20128323  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||  ||||||  | ||||||| ||||||||| ||||||||    
T  20128322 acccagtattccccggatacgtccttggaaggaactccttgc 20128281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 412 - 551
Target Start/End: Complemental strand, 7742036 - 7741897
Alignment:
Q  412 tttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaac 511  Q
    ||||||||| ||||| ||| || |||  |||||| |||||||||  ||||||||| | ||||| ||||||  ||| |||||||  |||||| | | ||||    
T  7742036 tttcgcaccagttttcgattcaccaaagatggacgactaatctggatcgtgcgtagaggcatgtgcactggccaagcgttgttacccctgagattggaac 7741937  T
Q  512 ccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||||||||| ||||||||  ||| ||||||||||||||    
T  7741936 ccgatattcctcgaatacgtacttgaaaggagctccttgc 7741897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 412 - 551
Target Start/End: Complemental strand, 33647832 - 33647693
Alignment:
Q  412 tttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaac 511  Q
    ||||||||||||||  |||||| |||  ||| || |||||||||  ||||||||| | | ||| |||||| |||| ||||||| |||||| |||||||||    
T  33647832 tttcgcaccggtttccgatccaccaaagatgaacgactaatctggttcgtgcgtagaggaatgtgcactggtcaagcgttgttctccctggaaatcgaac 33647733  T
Q  512 ccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||| ||||||    ||||||| ||| ||||||||||||||    
T  33647732 ccggtattccccagatacgtccttgaaaggagctccttgc 33647693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 411 - 561
Target Start/End: Complemental strand, 29895899 - 29895749
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||||||||||||||  || ||| ||||  ||||| ||||||| | ||| |||||| | ||||||||||||  |||  ||||||  |||||  |||||||    
T  29895899 ctttcgcaccggtttccgaaccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaa 29895800  T
Q  511 cccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    |||| ||||||  | ||||||| |||||||||||||||||| || ||||||    
T  29895799 cccggtattccccggatacgtccttggaaggagctccttgccactggagcc 29895749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 412 - 572
Target Start/End: Original strand, 40780861 - 40781021
Alignment:
Q  412 tttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaac 511  Q
    ||||||||||||||  || ||| |||   ||||| ||||||| | ||| |||||| | ||||||||||||| ||| |||||||  || ||| ||||||||    
T  40780861 tttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaagcgttgttccccttgagaatcgaac 40780960  T
Q  512 ccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||||||    ||||||||| ||  ||| |||||||||| || |||||| ||||||||||    
T  40780961 ccgatattttccgaatacgtccttaaaagaagctccttgccactggagcccagacaacttg 40781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 542
Target Start/End: Original strand, 48015071 - 48015203
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  |||||||||| | ||| | ||||||| | |||||||||| | || |||||||||  ||| |||||||  | |||  ||||||    
T  48015071 gctttcgcaccggtttccgatccatcaaaattgggctactaatccggctcgtgcgtagaggcttgcgcactggccaagcgttgttcccactgggaatcga 48015170  T
Q  510 acccgatattccttgaatacgtctttggaagga 542  Q
    ||||| ||||||| |  ||||||||||||||||    
T  48015171 acccggtattcctcgggtacgtctttggaagga 48015203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 572
Target Start/End: Complemental strand, 38075495 - 38075384
Alignment:
Q  461 tgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagc 560  Q
    |||||| | ||||||||||||  ||| |||||||| |||||| ||||||||||| |||||   ||||||||| ||||||||| ||||||||  | |||||    
T  38075495 tgcgtagaggcatgcgcactggccaagcgttgtttcccctgagaatcgaacccggtattctccgaatacgtccttggaaggaactccttgccgctggagc 38075396  T
Q  561 ctagacaacttg 572  Q
    | | ||||||||    
T  38075395 ccaaacaacttg 38075384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 416 - 542
Target Start/End: Complemental strand, 8824671 - 8824545
Alignment:
Q  416 gcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccga 515  Q
    ||||||||||| ||||||||| | || ||| ||||||||| |||||||||| | | |||| |||||||||| |||| ||||| ||   ||||||| |||     
T  8824671 gcaccggttttcgatccatcagtgatagacgactaatctgcctcgtgcgtagaggtatgcacactgatcaagcgtttttttctcttggaatcgaatccgg 8824572  T
Q  516 tattccttgaatacgtctttggaagga 542  Q
    |||||| |  |||||||||| ||||||    
T  8824571 tattccctagatacgtctttagaagga 8824545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 431 - 513
Target Start/End: Original strand, 26237441 - 26237523
Alignment:
Q  431 ccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaaccc 513  Q
    ||||||||  ||||| ||||||| ||||| |||||| |  ||| ||||||||||||||||||||| |||||| ||||||||||    
T  26237441 ccatcaatggtggactactaatccgactcatgcgtaaagacatacgcactgatcaaacgttgtttcccctgagaatcgaaccc 26237523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 571
Target Start/End: Original strand, 5472846 - 5473007
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||| ||||| || ||| |||   ||| | ||||||| | |||||||||| | ||||||||||||  ||| |||||||| |||||| |||| |    
T  5472846 gctttcgcaccagttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtttcccctgagaatcaa 5472945  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaactt 571  Q
    ||| | ||||||  | ||||||| ||| || ||||||||||| || |||||| | |||||||    
T  5472946 acctggtattccccggatacgtccttgaaatgagctccttgccactggagcccaaacaactt 5473007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 561
Target Start/End: Complemental strand, 1446908 - 1446788
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||| ||||||| | ||| |||||| | ||||||||||||  |||  ||||||  |||||  ||||||||||| ||||||  | ||||||| |||||||    
T  1446908 tggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcgaacccggtattccccggatacgtccttggaag 1446809  T
Q  541 gagctccttgctaccggagcc 561  Q
    ||||||||||| || ||||||    
T  1446808 gagctccttgccactggagcc 1446788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 551
Target Start/End: Original strand, 49952181 - 49952285
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | || |||||||||| ||||||||||||   ||||||||| ||||  ||||| |  ||||||||| |||||||||||||    
T  49952181 actaatccggctcatgcgtagaggcgtgcgcactgaccaaacgttgtttcttctgaaaatcaaacctaatatttcccgaatacgtccttggaaggagctc 49952280  T
Q  547 cttgc 551  Q
    |||||    
T  49952281 cttgc 49952285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 561
Target Start/End: Original strand, 3574481 - 3574595
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| |||||||||||| | ||||||||||||  |||  |||||| ||||||  ||| |||| || |||||| |   |||||| |||||||||||||    
T  3574481 actaatccgactcgtgcgtagaggcatgcgcactggccaagtgttgttctccctgggaattgaactcggtattccctaggtacgtccttggaaggagctc 3574580  T
Q  547 cttgctaccggagcc 561  Q
    ||||| || ||||||    
T  3574581 cttgccactggagcc 3574595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 410 - 551
Target Start/End: Complemental strand, 20421886 - 20421746
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||| || |||||  || |||||||| |||||| | ||||||| ||| |||||| | ||||||||||||  |||  ||||||  ||||| |||||||    
T  20421886 gctttcgaactggtttccgacccatcaatgatggacgattaatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctggaaatcga 20421787  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||| | ||||||    ||||||||||| ||||||||||||||    
T  20421786 accag-tattccccagatacgtctttgaaaggagctccttgc 20421746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 461 - 570
Target Start/End: Original strand, 40272380 - 40272489
Alignment:
Q  461 tgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagc 560  Q
    |||||| | ||||||||||||  ||| |||||||  || || |||||||||||||||||||  | |||| || |||||| ||||||||| | ||||||||    
T  40272380 tgcgtagaggcatgcgcactggccaagcgttgttccccatggaaatcgaacccgatattccccggatacatcattggaaagagctccttaccaccggagc 40272479  T
Q  561 ctagacaact 570  Q
    | | ||||||    
T  40272480 ccaaacaact 40272489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 551
Target Start/End: Complemental strand, 47078534 - 47078430
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | |||||||||| | ||||| ||||||  ||| |||||||  |||||  ||||||||||| ||||||  |  |||||| |||||||||||||    
T  47078534 actaatccggctcgtgcgtagaggcatgtgcactggccaagcgttgttccccctgggaatcgaacccggtattccccgggtacgtccttggaaggagctc 47078435  T
Q  547 cttgc 551  Q
    |||||    
T  47078434 cttgc 47078430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 561
Target Start/End: Complemental strand, 13552139 - 13552076
Alignment:
Q  498 cctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||| ||||||||||||||||||  | ||||||  |||||||||||||||||| || ||||||    
T  13552139 cctgagaatcgaacccgatattccccggatacgtgcttggaaggagctccttgccactggagcc 13552076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 551
Target Start/End: Complemental strand, 20354728 - 20354609
Alignment:
Q  432 catcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgt 531  Q
    |||||||| ||||| ||||||| ||||| |||||| | |||||||||||   ||| ||||||| |||||| ||||| ||| || ||||  | || | |||    
T  20354728 catcaatagtggacgactaatccgactcatgcgtagaggcatgcgcactagccaagcgttgttctccctggaaatcaaactcggtatttttcgagttcgt 20354629  T
Q  532 ctttggaaggagctccttgc 551  Q
    | |||||||||| |||||||    
T  20354628 ccttggaaggagatccttgc 20354609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 572
Target Start/End: Complemental strand, 53599122 - 53599011
Alignment:
Q  461 tgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagc 560  Q
    |||||| | ||||||||||||  |||||||||||   ||||  ||||||||||| ||||||  |  |||||| |||||||||||||||||| |  |||||    
T  53599122 tgcgtagaggcatgcgcactggccaaacgttgttcctcctgggaatcgaacccggtattccccgggtacgtccttggaaggagctccttgccaatggagc 53599023  T
Q  561 ctagacaacttg 572  Q
    | | ||||||||    
T  53599022 ccaaacaacttg 53599011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 545
Target Start/End: Complemental strand, 14568035 - 14567937
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagct 545  Q
    ||||||| |||||||||||| | | ||| |||||| |||| |||| || ||||||| ||||||||| | ||||||   |||||||| || |||||||||    
T  14568035 actaatccgactcgtgcgtagaggtatgtgcactggtcaagcgttattctccctgagaatcgaacctggtattccccaaatacgtccttagaaggagct 14567937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 517
Target Start/End: Complemental strand, 14859367 - 14859297
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgata 517  Q
    ||||||||| |||||||||| |  ||||||||||| |||||| |||||   ||||||||||||| ||||||    
T  14859367 actaatctggctcgtgcgtagagacatgcgcactggtcaaacattgttcctcctgaaaatcgaatccgata 14859297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 572
Target Start/End: Complemental strand, 38166140 - 38165978
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| |||   ||| | ||||||| | |||||||||| |  |||||||||||  ||| |||||||  |||||  |||| |    
T  38166140 gctttcgcaccggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagagccatgcgcactggccaagcgttgttccccctgggaatcca 38166041  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||  ||||||  | ||||||| |||||||||||||||||| |  |||||| | ||||||||    
T  38166040 acccagtattccccggatacgtccttggaaggagctccttgccagtggagcccaaacaacttg 38165978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 520
Target Start/End: Original strand, 3159504 - 3159577
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattc 520  Q
    ||||||||| |||||||||| | ||||||||||||  ||| |||||||  ||||| || ||||||||| |||||    
T  3159504 actaatctggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctggaagtcgaacccggtattc 3159577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 572
Target Start/End: Complemental strand, 15829811 - 15829650
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    ||||||||||||||| ||||||| ||||  ||||  ||||||| | ||| ||| || | ||||||||||||  |||  |||| || ||||||||||| ||    
T  15829811 ctttcgcaccggtttctgatccaccaatggtggaggactaatccggctcatgcctagaagcatgcgcactggccaagtgttgattcccctgaaaatcaaa 15829712  T
Q  511 cccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    |  |||||||   | ||||||| ||| ||| |||||||||  || |||||| | ||||||||    
T  15829711 ctggatattctccggatacgtccttgaaagaagctccttgtcactggagcccaaacaacttg 15829650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 572
Target Start/End: Complemental strand, 52950134 - 52950033
Alignment:
Q  471 catgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaact 570  Q
    |||||||||||  ||| |||||||  |||||  ||||||||||||||||||     |||||| |||||||||||||||||| ||  ||||| | ||||||    
T  52950134 catgcgcactggccaagcgttgttccccctgggaatcgaacccgatattccccaggtacgtccttggaaggagctccttgccactagagcccaaacaact 52950035  T
Q  571 tg 572  Q
    ||    
T  52950034 tg 52950033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 572
Target Start/End: Original strand, 1940779 - 1940934
Alignment:
Q  414 tcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaaccc 513  Q
    ||||||||||||| || ||| |||   ||| | ||||||| | |||||||||| | ||||||||||    ||| |||||||  |||||  ||||||||||    
T  1940779 tcgcaccggttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcacc---caagcgttgttccccctgggaatcgaaccc 1940875  T
Q  514 gatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    |||||| |  |  |||||| |||||||||||||||||| ||  ||||| | ||||||||    
T  1940876 gatatttcccgggtacgtccttggaaggagctccttgccactagagcccaaacaacttg 1940934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 486
Target Start/End: Complemental strand, 14858823 - 14858747
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaa 486  Q
    |||||||||||||||| ||| |||||||   ||||| | ||||||||||||| |||| |  ||||||||||| ||||    
T  14858823 gctttcgcaccggtttctgacccatcaaaggtggacgaataatctgactcgtacgtagagacatgcgcactggtcaa 14858747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 486
Target Start/End: Complemental strand, 17946602 - 17946526
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaa 486  Q
    ||||||||| ||||||| ||  || ||| | ||||||||||||||||||| || ||| | |||||||||||| ||||    
T  17946602 gctttcgcaacggttttcgactcaccaaaagtggacaactaatctgactcatgtgtagaagcatgcgcactggtcaa 17946526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 411 - 551
Target Start/End: Complemental strand, 2567384 - 2567244
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||||| ||||||||  || ||| |||  ||||||  ||||||||||||||| ||| | ||||||||||||  ||| |||||||||||| ||||||||||    
T  2567384 ctttcgtaccggtttccgacccaccaaagatggacggctaatctgactcgtgagtagaggcatgcgcactggccaagcgttgttttccccgaaaatcgaa 2567285  T
Q  511 cccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    |||| |||||   ||||||||| ||||||||||||||||||    
T  2567284 cccggtattctccgaatacgtccttggaaggagctccttgc 2567244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 420 - 572
Target Start/End: Complemental strand, 10336615 - 10336463
Alignment:
Q  420 cggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatatt 519  Q
    ||||||| ||||||||||   ||||| | ||||| | ||| |||||| | |||||||||||| |||| |||||||  |||||||||||||||||||||||    
T  10336615 cggttttcgatccatcaaaggtggacgattaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgaaaatcgaacccgatatt 10336516  T
Q  520 ccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    |   | |||||||||||||||||||||||||| || ||| || ||| ||||||    
T  10336515 ctccggatacgtctttggaaggagctccttgccactggaacccagataacttg 10336463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 461 - 571
Target Start/End: Original strand, 32150972 - 32151082
Alignment:
Q  461 tgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagc 560  Q
    |||||| | ||||||||||||| |||| ||||||  ||||| |||||||||| ||||||||| ||| ||||| |||||||||||||||||| || |||||    
T  32150972 tgcgtaaaggcatgcgcactgaccaaatgttgttccccctggaaatcgaacctgatattcctcgaaaacgtccttggaaggagctccttgccactggagc 32151071  T
Q  561 ctagacaactt 571  Q
    | | |||||||    
T  32151072 ccaaacaactt 32151082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 26325921 - 26325770
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| ||||  ||||| ||||||| | ||| |||||| | ||||||||||||| |||  ||||||  | |||  ||||||    
T  26325921 gctttcgcaccggtttccgacccaccaatggtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaagtgttgttcccgctgggaatcga 26325822  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||||||||||| | ||||||| ||| |||||||||||||| || ||||||    
T  26325821 acccgatattcctcggatacgtccttgaaaggagctccttgccactggagcc 26325770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 447 - 561
Target Start/End: Original strand, 48798106 - 48798220
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | |||||||||||  |||| |||||||  ||||| |||||||||||||||||||  | ||||||| |||||||||||||    
T  48798106 actaatccggctcatgcgtagaggcatgcgcactagtcaagcgttgttccccctggaaatcgaacccgatattccccggatacgtcattggaaggagctc 48798205  T
Q  547 cttgctaccggagcc 561  Q
    ||||| || ||||||    
T  48798206 cttgccactggagcc 48798220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 521
Target Start/End: Complemental strand, 13262192 - 13262081
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||| |||| ||||||| ||||| |||||  ||||| ||||||| |||||||||||| |  |||||| | ||| ||||||||||| |||||| |||||||    
T  13262192 gcttccgcatcggttttcgatccttcaatggtggacgactaatccgactcgtgcgtagagacatgcgtattgaccaaacgttgttctccctggaaatcga 13262093  T
Q  510 acccgatattcc 521  Q
    ||||| ||||||    
T  13262092 acccggtattcc 13262081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 410 - 572
Target Start/End: Original strand, 41663855 - 41664017
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| ||||  ||||| |||||||   ||| |||||| | ||||||||||||| |||  ||||||  |||||  ||||||    
T  41663855 gctttcgcaccggtttccgacccaccaatggtggacgactaatccagctcatgcgtagaggcatgcgcactgaccaagtgttgttccccctgggaatcga 41663954  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||| ||||||  | ||||||| || ||||||||||||||| || |||||| | ||||||||    
T  41663955 acccggtattccccggatacgtccttagaaggagctccttgccactggagcccaaacaacttg 41664017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 572
Target Start/End: Complemental strand, 5504139 - 5503978
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||||| ||||||||  || |||||||   ||||| ||||||| | ||| |||||| | ||||| ||||| ||||| ||||||||||||||| |||||||    
T  5504139 ctttcgtaccggtttccgacccatcaaaggtggacgactaatccggctcatgcgtagaggcatgtgcactaatcaagcgttgttttccctgagaatcgaa 5504040  T
Q  511 cccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    || ||||||||    ||||||  | |||||||||||||||| || ||| || | ||||||||    
T  5504039 cctgatattccccagatacgttctcggaaggagctccttgccactggaacccaaacaacttg 5503978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 447 - 572
Target Start/End: Complemental strand, 5855594 - 5855469
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | ||||||||||||  ||| |||||||   ||||  ||||||||||| ||||||  ||||||||| |||||||||||||    
T  5855594 actaatccgcctcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccgaatacgtccttggaaggagctc 5855495  T
Q  547 cttgctaccggagcctagacaacttg 572  Q
    ||||| || |||||| | ||||||||    
T  5855494 cttgccactggagcccaaacaacttg 5855469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 546
Target Start/End: Original strand, 18649390 - 18649487
Alignment:
Q  449 taatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| ||||| |||| | |||||||||||| |||| |||||||  ||||||||||||||||||||||||     ||||||| |||||||||||||    
T  18649390 taatctggctcgtacgtagaggcatgcgcactggtcaagcgttgttccccctgaaaatcgaacccgatattctccagatacgtccttggaaggagctc 18649487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 447 - 548
Target Start/End: Original strand, 33004051 - 33004152
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | |||||||||| | ||||||||||||  ||| | |||||| ||||| |||||||| ||||||||||  | ||||||| |||||||||||||    
T  33004051 actaatccggctcgtgcgtagaggcatgcgcactggccaagcattgtttcccctggaaatcgaatccgatattccccggatacgtccttggaaggagctc 33004150  T
Q  547 ct 548  Q
    ||    
T  33004151 ct 33004152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 447 - 551
Target Start/End: Complemental strand, 16956538 - 16956434
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | |||||||||| | |||||||||||| ||||||||||||  |||||| || ||||| || ||||||  |  |||||| |||||||||||||    
T  16956538 actaatccggctcgtgcgtagaggcatgcgcactggtcaaacgttgttacccctgagaaccgaacacggtattccccgggtacgtccttggaaggagctc 16956439  T
Q  547 cttgc 551  Q
    |||||    
T  16956438 cttgc 16956434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 8764100 - 8763949
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| |||   ||||| ||||||| | |||||||||| | ||||||||||||  |||  ||||||  |||||  || |||    
T  8764100 gctttcgcaccggtttccgacccaccaacggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttccccctgggaaacga 8764001  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||||||||||  |  |||||| |||||||||||||||||| || ||||||    
T  8764000 acccgatattccccgggtacgtccttggaaggagctccttgccacgggagcc 8763949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 444 - 551
Target Start/End: Original strand, 17358504 - 17358611
Alignment:
Q  444 acaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggag 543  Q
    |||||||||| | ||| |||||| | ||||||||| || |||| ||||||| ||||||| ||||||||||| ||||||   |||||||| ||| || |||    
T  17358504 acaactaatcgggctcatgcgtaaaggcatgcgcattggtcaagcgttgttctccctgagaatcgaacccggtattccccaaatacgtccttgaaatgag 17358603  T
Q  544 ctccttgc 551  Q
    ||||||||    
T  17358604 ctccttgc 17358611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 551
Target Start/End: Original strand, 17092480 - 17092617
Alignment:
Q  414 tcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaaccc 513  Q
    |||||||||||| ||||| | |||   ||||| ||||||| | |||||||||| | |||| | |||||  ||| |||||||| ||||||||||||||| |    
T  17092480 tcgcaccggtttctgatctaccaaaggtggacgactaatccggctcgtgcgtagaggcatacacactggccaatcgttgtttcccctgaaaatcgaactc 17092579  T
Q  514 gatattccttgaatacgtctttggaaggagctccttgc 551  Q
    |||||| |  |||||||||  || |||||||| |||||    
T  17092580 gatatttcccgaatacgtccatgaaaggagcttcttgc 17092617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 504 - 561
Target Start/End: Complemental strand, 41743288 - 41743231
Alignment:
Q  504 aatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||||||||| ||||||| | ||||||| |||||||||||||||||| |||||||||    
T  41743288 aatcgaacccggtattcctcggatacgtccttggaaggagctccttgccaccggagcc 41743231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 494
Target Start/End: Complemental strand, 28417055 - 28416971
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgtt 494  Q
    |||||| |||||||||| |||||||||||| ||  ||||||||| |  ||||||||| |||||||||| |||  |||||||||||    
T  28417055 gctttcacaccggttttcgatccatcaatagtgagcaactaatcgggttcgtgcgtagatgcatgcgccctggccaaacgttgtt 28416971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 551
Target Start/End: Original strand, 40226278 - 40226382
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    |||||||||||| ||||||| | ||||||  ||||| ||| |||||||  | |||| |||||||   ||||||| | ||||||||| |||||||||||||    
T  40226278 actaatctgacttgtgcgtagaggcatgcatactgaccaagcgttgttacctctgataatcgaatatgatattcttcgaatacgtccttggaaggagctc 40226377  T
Q  547 cttgc 551  Q
    |||||    
T  40226378 cttgc 40226382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 441 - 572
Target Start/End: Complemental strand, 10422866 - 10422735
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||| ||||||| | ||| |||||| | ||||||||||||  |||  ||||||   |||  |||||||||||| ||||||  ||||||||| |||||||    
T  10422866 tggacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttcctcctagaaatcgaacccggtattccccgaatacgtcattggaag 10422767  T
Q  541 gagctccttgctaccggagcctagacaacttg 572  Q
    ||||||||||| || | |||| | ||||||||    
T  10422766 gagctccttgccactgtagcccaaacaacttg 10422735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 410 - 561
Target Start/End: Original strand, 43959820 - 43959971
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  ||||||  ||   ||| | ||||||| | |||||||||| | ||||||||||||  ||| |||||||  |||||  ||| ||    
T  43959820 gctttcgcaccggtttccgatccactaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctgggaattga 43959919  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||||||||||  |  |||||| ||||||||||| |||||| || ||||||    
T  43959920 acccgatattccccgggtacgtcattggaaggagcaccttgccactggagcc 43959971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 49078223 - 49078072
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || | | ||||  || || ||||||| | ||| |||||| | ||||||||||||  |||  ||||||| |||||  ||||||    
T  49078223 gctttcgcaccggtttccgacctaccaatggtgaacgactaatccggctcatgcgtagaggcatgcgcactggccaagtgttgtttcccctgggaatcga 49078124  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||| ||||||  | ||||||| || ||||||||||||||| || ||||||    
T  49078123 acccggtattccccggatacgtccttagaaggagctccttgccactggagcc 49078072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 548
Target Start/End: Original strand, 50503407 - 50503498
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctcct 548  Q
    |||||||||| | |||||||||||| ||||  ||||||  |||||  ||||||||||||||||||  | ||||||| ||| |||||||||||    
T  50503407 ctcgtgcgtagaggcatgcgcactggtcaagtgttgttccccctgggaatcgaacccgatattccccggatacgtccttgaaaggagctcct 50503498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 563
Target Start/End: Original strand, 9659209 - 9659330
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||| ||||||| | ||| |||||| | |||||||||||  ||||||||||||  |||||  ||||||||||| ||||||  || |||||| || |||     
T  9659209 tggacgactaatccggctcatgcgtaaaggcatgcgcactagtcaaacgttgttc-ccctgggaatcgaacccggtattccccgagtacgtccttagaat 9659307  T
Q  541 gagctccttgctaccggagccta 563  Q
    ||||||||||| || ||||||||    
T  9659308 gagctccttgccactggagccta 9659330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 551
Target Start/End: Original strand, 14254298 - 14254408
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||| ||||||| | ||| |||||| | ||||||| ||||  ||| |||||||  ||||||||||||||| || ||||||  ||||||||| ||||||     
T  14254298 tggacgactaatccggctcatgcgtaaaggcatgcgtactggccaagcgttgttccccctgaaaatcgaactcggtattccccgaatacgtccttggaat 14254397  T
Q  541 gagctccttgc 551  Q
    ||| |||||||    
T  14254398 gagttccttgc 14254408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 544
Target Start/End: Complemental strand, 15466034 - 15465940
Alignment:
Q  450 aatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagc 544  Q
    |||| |||||||||||| | ||||| ||||||| ||| |||||||  ||||| |||||||||| | ||||||   |||||||| |||||||||||    
T  15466034 aatcagactcgtgcgtagaggcatgtgcactgaccaagcgttgttccccctggaaatcgaacctggtattccccaaatacgtccttggaaggagc 15465940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 543
Target Start/End: Original strand, 42710188 - 42710270
Alignment:
Q  461 tgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggag 543  Q
    |||||| | ||||||||||||  |||   |||||| |||||||||||||||||||||||   || ||||||||||||||||||    
T  42710188 tgcgtagaggcatgcgcactggccaagtattgtttcccctgaaaatcgaacccgatattttctggatacgtctttggaaggag 42710270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 410 - 551
Target Start/End: Complemental strand, 17389880 - 17389740
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||||||  ||||||| |||||||   ||| |||||  | |||||||||||| |||||| ||| || ||| |||||||||    
T  17389880 gctttcgcaccggtttccgacccatcagcaatggacgactaatccagctcatgcgtggaggcatgcgcactggtcaaacattg-ttcccccgaaaatcga 17389782  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    | |||||||| |  | | ||||| ||| ||||||||||||||    
T  17389781 atccgatatttcccggaaacgtcattgaaaggagctccttgc 17389740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 449 - 554
Target Start/End: Complemental strand, 26258765 - 26258661
Alignment:
Q  449 taatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctcct 548  Q
    ||||| ||||| |||||| | ||||| ||||||| ||| |||||| |||| ||| ||||||| ||| ||||||  |  ||||||||||||||||||||||    
T  26258765 taatccgactcatgcgtaaaggcatgtgcactgaccaagcgttgtcttcc-tgagaatcgaatccggtattccccgggtacgtctttggaaggagctcct 26258667  T
Q  549 tgctac 554  Q
    | ||||    
T  26258666 tactac 26258661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 551
Target Start/End: Original strand, 40288513 - 40288617
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | |||||| ||| | ||||||  ||||  ||| |||||||  ||||| |||||||||||| ||||||  ||||||||| |||||| ||||||    
T  40288513 actaatccggctcgtgtgtagaggcatgcatactggccaaccgttgttccccctggaaatcgaacccggtattccccgaatacgtccttggaaagagctc 40288612  T
Q  547 cttgc 551  Q
    |||||    
T  40288613 cttgc 40288617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 572
Target Start/End: Complemental strand, 31152794 - 31152663
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||| |||||| ||||||||| ||| | ||| ||||||||| ||| |||| ||  ||| | |||||||||||| |||||| ||  ||| || ||||||     
T  31152794 tggacgactaatttgactcgtgtgtagaggcacgcgcactgaccaagcgttattcccccgggaaatcgaacccggtattccctgggtacatccttggaaa 31152695  T
Q  541 gagctccttgctaccggagcctagacaacttg 572  Q
    ||||||||||| ||  ||||| | ||||||||    
T  31152694 gagctccttgccactagagcccaaacaacttg 31152663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 51437517 - 51437442
Alignment:
Q  471 catgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||||||| |||| |||||||  || ||  ||||||||||||||||||| | ||||||| ||| |||||||||    
T  51437517 catgcgcactggtcaagcgttgttccccatgggaatcgaacccgatattcctcggatacgtccttgaaaggagctc 51437442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 561
Target Start/End: Complemental strand, 26660210 - 26660096
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | ||||||| |||||||||| ||||||  || || |||||||||||| ||||||  ||||||||| || |||| | |||    
T  26660210 actaatccggctcatgcgtagaggcatgcgtactgatcaaatgttgttccccgtggaaatcgaacccggtattccccgaatacgtcattcgaagaaactc 26660111  T
Q  547 cttgctaccggagcc 561  Q
     |||| || ||||||    
T  26660110 tttgccactggagcc 26660096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 5063958 - 5064007
Alignment:
Q  526 atacgtctttggaaggagctccttgctaccggagcctagacaacttgttt 575  Q
    ||||||| |||||||||||| ||||| ||| ||||||| |||||||||||    
T  5063958 atacgtccttggaaggagcttcttgccaccagagcctaaacaacttgttt 5064007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 33418231 - 33418276
Alignment:
Q  527 tacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||||||||||||||||||||||| || |||||| | ||||||||    
T  33418231 tacgtctttggaaggagctccttgccactggagcccaaacaacttg 33418276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 551
Target Start/End: Original strand, 45361941 - 45362022
Alignment:
Q  470 gcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||||||||||  ||| |||||||   ||||| ||||||||||| ||||||  |  |||||| ||||||||||||||||||    
T  45361941 gcatgcgcactggccaagcgttgttcctcctgagaatcgaacccggtattcccagggtacgtccttggaaggagctccttgc 45362022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 543
Target Start/End: Original strand, 12744583 - 12744655
Alignment:
Q  471 catgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggag 543  Q
    ||||||||||  |||| |||||||  |||||||||||||| | |||||||||   ||||||| ||||||||||    
T  12744583 catgcgcactagtcaagcgttgttccccctgaaaatcgaatctgatattcctcagatacgtccttggaaggag 12744655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 543
Target Start/End: Original strand, 12755573 - 12755645
Alignment:
Q  471 catgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggag 543  Q
    ||||||||||  |||| |||||||  |||||||||||||| | |||||||||   ||||||| ||||||||||    
T  12755573 catgcgcactagtcaagcgttgttccccctgaaaatcgaatctgatattcctcagatacgtccttggaaggag 12755645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 551
Target Start/End: Original strand, 15238142 - 15238246
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    |||||| ||| ||||||||| | |||||| || ||  ||| ||||| |  |||||  |||||||||||||||||| |   |||||| |||||||||||||    
T  15238142 actaatatgattcgtgcgtagaggcatgctcattggccaagcgttgctccccctgggaatcgaacccgatattccctaggtacgtccttggaaggagctc 15238241  T
Q  547 cttgc 551  Q
    |||||    
T  15238242 cttgc 15238246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 34719848 - 34719804
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgtt 491  Q
    |||||||||||||||||||| | |||||||||||| |||| ||||    
T  34719848 actaatctgactcgtgcgtagaggcatgcgcactggtcaagcgtt 34719804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 511
Target Start/End: Original strand, 50371834 - 50371934
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||||||||||||||  |||||| |||  |||| | ||||||| | || ||||||| | ||||||| ||||  ||| ||||||| | |||||||||||||    
T  50371834 ctttcgcaccggtttccgatccaccaaagatgggcgactaatccggcttgtgcgtagaagcatgcgtactggccaagcgttgttcttcctgaaaatcgaa 50371933  T
Q  511 c 511  Q
    |    
T  50371934 c 50371934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 412 - 551
Target Start/End: Complemental strand, 2785038 - 2784900
Alignment:
Q  412 tttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaac 511  Q
    ||||||||||||||  ||  ||||||| |||||| ||||||||||||| |||||| | ||||||||||||| ||||  ||| ||||||||||||||||||    
T  2785038 tttcgcaccggtttccgactcatcaatgatggacgactaatctgactcatgcgtagaggcatgcgcactgaccaaatcttg-tttccctgaaaatcgaac 2784940  T
Q  512 ccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
     || ||||||| | ||||||| ||| ||||||||| ||||    
T  2784939 tcggtattcctcggatacgtccttgaaaggagctcattgc 2784900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 411 - 572
Target Start/End: Complemental strand, 12864331 - 12864170
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||||||||||||||  || ||| ||||  ||||| ||||||||| ||| |||| | | ||||||||||||| |||  ||||||  ||||| ||||||||    
T  12864331 ctttcgcaccggtttccgacccaccaatggtggacgactaatctggctcatgcgcagaggcatgcgcactgaccaagtgttgttccccctggaaatcgaa 12864232  T
Q  511 cccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
     ||| ||||||  ||||||||| |||||||||||||||||  || |||||| | ||||||||    
T  12864231 tccggtattccccgaatacgtcattggaaggagctccttgtcactggagcccaaacaacttg 12864170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 410 - 550
Target Start/End: Complemental strand, 34722788 - 34722649
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||||||||||||| |||||||||||   ||| | ||||||| | |||||||||| |  |||| ||||||| ||| ||||||| ||||||| ||||||    
T  34722788 gctttcgcaccggtttctgatccatcaaaggtgggcgactaatccggctcgtgcgtagagacatgtgcactgaccaagcgttgttctccctgagaatcga 34722689  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttg 550  Q
    |||| |||||| ||   |||||| |||||||||||||||||    
T  34722688 accc-atattcatttggtacgtccttggaaggagctccttg 34722649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 410 - 572
Target Start/End: Complemental strand, 37560281 - 37560119
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||| |||||||||| || |||||||   ||||| | ||||| | |||||||||| | ||||||||||||| |||||||||||  || ||| ||||||    
T  37560281 gctttcacaccggttttcgacccatcaaaggtggacgattaatccggctcgtgcgtagaggcatgcgcactgaccaaacgttgttccccttgagaatcga 37560182  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||| | ||||||| |  |||||| |||||||||||| ||| | || |||||| | ||||||||    
T  37560181 acctggtattcctcgggtacgtccttggaaggagcttcttaccactggagcccaaacaacttg 37560119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 447 - 572
Target Start/End: Complemental strand, 41187920 - 41187795
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | |||||||||||| |||| ||||||||| ||| | ||| |||  || ||||||| | ||||||| |||||||||||||    
T  41187920 actaatccgtctcatgcgtagaggcatgcgcactggtcaagcgttgtttttcctaagaattgaattcggtattcctcggatacgtccttggaaggagctc 41187821  T
Q  547 cttgctaccggagcctagacaacttg 572  Q
    ||||| |||| |||| ||||||||||    
T  41187820 cttgccaccgaagcccagacaacttg 41187795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 411 - 522
Target Start/End: Original strand, 18846220 - 18846331
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||||||||||||||| ||||||||||| |||  | | ||||||| ||||| |||| | ||||||||||||  ||| |||||||| |||||||||| |||    
T  18846220 ctttcgcaccggttttcgatccatcaatgatgagcgattaatctggctcgtacgtaaaggcatgcgcactgcccaagcgttgtttcccctgaaaattgaa 18846319  T
Q  511 cccgatattcct 522  Q
     | |||||||||    
T  18846320 tcagatattcct 18846331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 457 - 560
Target Start/End: Complemental strand, 21286505 - 21286402
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccg 556  Q
    |||||||||| | |||||||||||| |||| ||||||||  ||||  ||||||||||| ||||||  | ||||||| |||||||||||||||||| || |    
T  21286505 ctcgtgcgtagaggcatgcgcactggtcaagcgttgtttcgcctgggaatcgaacccggtattccccggatacgtccttggaaggagctccttgccactg 21286406  T
Q  557 gagc 560  Q
    ||||    
T  21286405 gagc 21286402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 25549836 - 25549685
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||| |||||| |||  ||||||||||  |||||| ||||||| | |||||||||| | ||||| |||||   |||| |||||||||||| | ||||||    
T  25549836 gcttttgcaccgatttacgatccatcaaagatggacgactaatccggctcgtgcgtagaggcatgtgcactagccaaatgttgttttccctaagaatcga 25549737  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||  ||||||   |||||||  |||||||||||||||||| || ||||||    
T  25549736 acccagtattccccaaatacgtacttggaaggagctccttgccactggagcc 25549685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 549
Target Start/End: Original strand, 28616377 - 28616516
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||||||||||||| ||| |||  ||  |||| | ||||||||| |||||||||| | ||||||||||||  |||  ||| ||  |||||||||||||    
T  28616377 gctttcgcaccggtttctgacccactaaagatgggcgactaatctggctcgtgcgtagaggcatgcgcactgcccaagtgttattccccctgaaaatcga 28616476  T
Q  510 acccgatattccttgaatacgtctttggaaggagctcctt 549  Q
    ||||||||||||  | ||| ||| |||||||||| |||||    
T  28616477 acccgatattccgcggatatgtccttggaaggagttcctt 28616516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 447 - 549
Target Start/End: Complemental strand, 16035008 - 16034906
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||||| |||||| |||||| ||||| |||| |||||||   ||||||||||||||||| ||||||| | ||||||| |||||||||| ||    
T  16035008 actaatccggctcgtacgtataggcatgcacactggtcaagcgttgttccgcctgaaaatcgaacccggtattcctcggatacgtccttggaaggagttc 16034909  T
Q  547 ctt 549  Q
    |||    
T  16034908 ctt 16034906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 504 - 572
Target Start/End: Original strand, 23500774 - 23500841
Alignment:
Q  504 aatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||| ||||||||| | ||||||||    
T  23500774 aatcgaacccgatattccccga-tacgtctttggaaggagctccttgccaccggagcccaaacaacttg 23500841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 561
Target Start/End: Original strand, 18902528 - 18902679
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| |||   ||| | ||||||||| |||||||||| |  || |||||||| |||| |||||||  || ||  ||||||    
T  18902528 gctttcgcaccggtttccgacccaccaaaggtgggcgactaatctggctcgtgcgtagagacacgcgcactggtcaagcgttgttccccgtgggaatcga 18902627  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||| ||||||  || |||||| |||||||||||||||||| || ||||||    
T  18902628 acccggtattccccgagtacgtccttggaaggagctccttgccactggagcc 18902679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 561
Target Start/End: Original strand, 19976866 - 19976956
Alignment:
Q  471 catgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    |||||||||||| |||||||| ||  |||||||||||||||||| ||||||  | ||||||| |||||| ||||| ||||| || ||||||    
T  19976866 catgcgcactgaccaaacgttattccccctgaaaatcgaacccggtattccccggatacgtccttggaaagagctacttgccactggagcc 19976956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 461 - 539
Target Start/End: Original strand, 40968964 - 40969042
Alignment:
Q  461 tgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaa 539  Q
    |||||| | |||| |||||||| |||||||||||||||||| |||||||||||| |||||| |||  ||||| ||||||    
T  40968964 tgcgtagaggcattcgcactgaccaaacgttgttttccctggaaatcgaacccggtattccctgagaacgtccttggaa 40969042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 572
Target Start/End: Original strand, 14169608 - 14169769
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||||||||||||||  || ||| ||||  | ||| ||||||| | ||| |||||| |  ||||||||||| ||||  ||||||  ||| || |||||||    
T  14169608 ctttcgcaccggtttccgacccaccaatggtagacgactaatccggctcatgcgtagagacatgcgcactggtcaagtgttgttcccccggagaatcgaa 14169707  T
Q  511 cccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    |||||||||||  ||||||||| |||||| || |||||||  || |||||| | ||||||||    
T  14169708 cccgatattccccgaatacgtccttggaaagatctccttgtcactggagcccaaacaacttg 14169769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 551
Target Start/End: Original strand, 10026651 - 10026755
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | ||||||||||||  |||||||||||  |||||| ||||||||||| ||||    || |||||| |||||||||||||    
T  10026651 actaatccggctcatgcgtagaggcatgcgcactggccaaacgttgttccccctgagaatcgaacccggtattttccgagtacgtccttggaaggagctc 10026750  T
Q  547 cttgc 551  Q
    |||||    
T  10026751 cttgc 10026755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 551
Target Start/End: Original strand, 10046512 - 10046615
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | |||||||||||| ||||||||||||| || ||| ||||||||||| |||||   | ||||||  |||||||||||||    
T  10046512 actaatccggctcatgcgtagaggcatgcgcactg-tcaaacgttgtttcccttgagaatcgaacccggtattctccggatacgttcttggaaggagctc 10046610  T
Q  547 cttgc 551  Q
    |||||    
T  10046611 cttgc 10046615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 551
Target Start/End: Original strand, 13026446 - 13026550
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | ||||||||||||  ||| | |||||   ||||| |||||||||||||||||| || ||||||| |||||||||| ||    
T  13026446 actaatccggctcatgcgtagaggcatgcgcactggccaatcattgttcctcctgataatcgaacccgatattccctggatacgtccttggaaggagttc 13026545  T
Q  547 cttgc 551  Q
    |||||    
T  13026546 cttgc 13026550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 8410239 - 8410088
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||  ||| | ||| | ||||||| | |||||||||| | ||||||||||||  |||  ||||||  |||||  ||||||    
T  8410239 gctttcgcaccggtttccgaccccccaaaagtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcga 8410140  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    |||||||||||   |  |||||| |||||||||||||||||| || ||||||    
T  8410139 acccgatattctccgggtacgtccttggaaggagctccttgccactggagcc 8410088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 414 - 549
Target Start/End: Original strand, 31740763 - 31740898
Alignment:
Q  414 tcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaaccc 513  Q
    ||||||| ||||| |||||| |||   ||||| |||| |||||||||||| || | |||| |||||||| ||| ||||||  ||||||| ||||||| |     
T  31740763 tcgcaccagttttcgatccaccaaaggtggacgactagtctgactcgtgcctagaagcattcgcactgaccaagcgttgtaatccctgataatcgaatct 31740862  T
Q  514 gatattccttgaatacgtctttggaaggagctcctt 549  Q
    | |||||||| | |||||  |||||| |||||||||    
T  31740863 ggtattccttaagtacgttcttggaatgagctcctt 31740898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 447 - 520
Target Start/End: Original strand, 3848949 - 3849022
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattc 520  Q
    ||||||| |||||||||||| |  ||||||| |||  |||||||||||| |||||| ||||||||||| |||||    
T  3848949 actaatccgactcgtgcgtagagacatgcgccctggccaaacgttgtttcccctgataatcgaacccggtattc 3849022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 500 - 549
Target Start/End: Original strand, 14506544 - 14506593
Alignment:
Q  500 tgaaaatcgaacccgatattccttgaatacgtctttggaaggagctcctt 549  Q
    ||||||||||||||  |||||||| |||||||||||||||| ||||||||    
T  14506544 tgaaaatcgaacccagtattccttcaatacgtctttggaagaagctcctt 14506593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 549
Target Start/End: Complemental strand, 20533187 - 20533087
Alignment:
Q  449 taatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctcct 548  Q
    ||||| ||||||| |||| | ||||||||| |   ||||||||||||| | ||| |||| |||||||||||||    ||| |||||||||||||||||||    
T  20533187 taatccgactcgtacgtagaggcatgcgcattagccaaacgttgtttttcgtgagaatcaaacccgatattccccagatatgtctttggaaggagctcct 20533088  T
Q  549 t 549  Q
    |    
T  20533087 t 20533087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 561
Target Start/End: Complemental strand, 29653688 - 29653584
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccg 556  Q
    |||||||||| | ||||||||||||  ||| |||||||||||||| |||||||| ||| |||| |  || |||||| ||||||| || || |||| || |    
T  29653688 ctcgtgcgtagaggcatgcgcactgcccaagcgttgttttccctggaaatcgaatccggtatttccggagtacgtccttggaagaagttcattgccactg 29653589  T
Q  557 gagcc 561  Q
    |||||    
T  29653588 gagcc 29653584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 551
Target Start/End: Original strand, 39201543 - 39201647
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | |||||| |||||  ||||| |||||  |||||| |||||||  || ||||||| || |||||| |||||||||||||    
T  39201543 actaatccggctcatgcgtagaggcatgcacactggccaaacattgttccccctgagaatcgaattcggtattcctcgagtacgtccttggaaggagctc 39201642  T
Q  547 cttgc 551  Q
    |||||    
T  39201643 cttgc 39201647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 561
Target Start/End: Original strand, 42770696 - 42770800
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccg 556  Q
    |||||||| | | ||||||||||||  ||| |||||||  |||||| ||| ||||||| |||| || | ||||||| ||||||||||||| |||| || |    
T  42770696 ctcgtgcgaagaggcatgcgcactggccaagcgttgttccccctgagaattgaacccggtatttctcggatacgtccttggaaggagctctttgccactg 42770795  T
Q  557 gagcc 561  Q
    |||||    
T  42770796 gagcc 42770800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 561
Target Start/End: Original strand, 2528399 - 2528490
Alignment:
Q  470 gcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    |||||| |||||| ||| |||||||  |||||  ||||||||||| | ||||| || |||||| ||||||||||||| |||| || ||||||    
T  2528399 gcatgcacactgaccaagcgttgttccccctgggaatcgaacccggtgttcctcgagtacgtccttggaaggagctcattgccactggagcc 2528490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 551
Target Start/End: Original strand, 3811783 - 3811830
Alignment:
Q  504 aatcgaacccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||||||||||||||||| || |||||| |||||||||| |||||||    
T  3811783 aatcgaacccgatattcctcgagtacgtccttggaaggagttccttgc 3811830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 521
Target Start/End: Complemental strand, 12455418 - 12455307
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| ||||  ||  | ||||||| | |||||||||| | ||||||||||||   || |||||||| ||||| |||||||    
T  12455418 gctttcgcaccggtttccgacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgcgcactggctaagcgttgtttcccctggaaatcga 12455319  T
Q  510 acccgatattcc 521  Q
    ||||| ||||||    
T  12455318 acccggtattcc 12455307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 549
Target Start/End: Original strand, 15234059 - 15234198
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||| ||||||  || | |||||  ||| || |||||||| ||| ||||||| | |||||||||||| ||||  ||||||  |||||| ||||||    
T  15234059 gctttcgcatcggtttccgacctatcaaagatgaacgactaatctaacttgtgcgtagaggcatgcgcactggtcaagtgttgttccccctgagaatcga 15234158  T
Q  510 acccgatattccttgaatacgtctttggaaggagctcctt 549  Q
    |||   ||||||  |  |||||| ||||||||||||||||    
T  15234159 acctagtattccccgggtacgtccttggaaggagctcctt 15234198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 551
Target Start/End: Original strand, 31596504 - 31596571
Alignment:
Q  484 caaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||| |||||  |||||||||| ||||| |||||||   | ||||||||||||||||||||||||||    
T  31596504 caaacattgttccccctgaaaatagaacctgatattctacggatacgtctttggaaggagctccttgc 31596571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 561
Target Start/End: Complemental strand, 7747345 - 7747231
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | |||||| |||||  |||||||||||   |||   ||||||||||| ||||||  | ||||||| |||||||||||||    
T  7747345 actaatccggctcatgcgtagaggcatgcacactggccaaacgttgttcctcctaggaatcgaacccggtattccccggatacgtccttggaaggagctc 7747246  T
Q  547 cttgctaccggagcc 561  Q
    ||||| || ||||||    
T  7747245 cttgccactggagcc 7747231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 561
Target Start/End: Complemental strand, 15079554 - 15079440
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    |||||| || |||||||||| |  ||||| ||||| |||| |||||||  ||||| |||||||||||  ||||||  |  |||||| |||||||| | ||    
T  15079554 actaatttggctcgtgcgtagagtcatgcacactggtcaagcgttgttccccctggaaatcgaaccctgtattccccgggtacgtccttggaaggtgttc 15079455  T
Q  547 cttgctaccggagcc 561  Q
    ||||| |||||||||    
T  15079454 cttgccaccggagcc 15079440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 519
Target Start/End: Original strand, 16636110 - 16636172
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatatt 519  Q
    |||||||||| | |||||| ||||||||||  ||||||| | || ||||||||||||||||||    
T  16636110 ctcgtgcgtagaagcatgcacactgatcaagtgttgtttcctctaaaaatcgaacccgatatt 16636172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 572
Target Start/End: Complemental strand, 34356254 - 34356152
Alignment:
Q  470 gcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaac 569  Q
    ||||||||||||| |||  ||||||  ||||| |||||||||||| ||||||    ||||||| ||||||  |||||||||| || |||||| | |||||    
T  34356254 gcatgcgcactgaccaagtgttgttccccctggaaatcgaacccggtattccccagatacgtccttggaaatagctccttgccactggagcccaaacaac 34356155  T
Q  570 ttg 572  Q
    |||    
T  34356154 ttg 34356152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 549
Target Start/End: Complemental strand, 38962870 - 38962732
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||||||||| |||| ||| ||| |||   ||||| ||||||| |  || |||||| | ||||||||||||  ||| |||||||   |||||||||||||    
T  38962870 ctttcgcaccagtttctgacccaccaaaggtggacgactaatccggttcatgcgtagaggcatgcgcactggccaagcgttgttcctcctgaaaatcgaa 38962771  T
Q  511 cccgatattccttgaatacgtctttggaaggagctcctt 549  Q
    |||| ||||||  | ||||||| ||| || |||||||||    
T  38962770 cccggtattccccggatacgtccttgaaatgagctcctt 38962732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 521
Target Start/End: Original strand, 39806884 - 39806994
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    ||||||||||||||| ||| ||| |||   ||||  ||||||| |||||||| ||| | ||||||||||||  ||||||||||||  | ||  |||||||    
T  39806884 ctttcgcaccggtttatgaaccaccaaaggtggatgactaatccgactcgtgtgtagaggcatgcgcactggccaaacgttgtttctcttgggaatcgaa 39806983  T
Q  511 cccgatattcc 521  Q
    |||| ||||||    
T  39806984 cccggtattcc 39806994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 561
Target Start/End: Complemental strand, 2550882 - 2550825
Alignment:
Q  504 aatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||||||||||||||||  | ||||||| ||| |||||||||||||| || ||||||    
T  2550882 aatcgaacccgatattccccggatacgtccttgtaaggagctccttgccactggagcc 2550825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 572
Target Start/End: Original strand, 18649061 - 18649186
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| ||||| |||||| | ||||||||||||  ||||  |||||   ||||| ||||||| ||| |||||| ||||| | || ||||||| ||||     
T  18649061 actaatccgactcatgcgtagaggcatgcgcactgcccaaatattgttcctcctgagaatcgaatccggtattccctgaatgcatccttggaagcagctt 18649160  T
Q  547 cttgctaccggagcctagacaacttg 572  Q
    ||||| || |||||| | ||||||||    
T  18649161 cttgccactggagcccaaacaacttg 18649186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 572
Target Start/End: Original strand, 21180349 - 21180474
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | |||||||||| | ||||| ||||||  |||  |||||| ||| ||  ||||||| ||| ||||| | |  |||||| |||||||||||||    
T  21180349 actaatccggctcgtgcgtagaggcatgtgcactggccaagtgttgttctccatgggaatcgaatccggtattcttcgggtacgtccttggaaggagctc 21180448  T
Q  547 cttgctaccggagcctagacaacttg 572  Q
    ||||| || |||||| | ||||||||    
T  21180449 cttgccactggagcccaaacaacttg 21180474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 25540402 - 25540543
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| |||   ||||| ||||||| | |||||||||| | ||||||||||||  ||| |||||||  ||||   ||||||    
T  25540402 gctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctaggaatcga 25540501  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||  ||||||    ||||||| |||||| |||||||||||    
T  25540502 acccagtattccccagatacgtccttggaatgagctccttgc 25540543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 44)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 410 - 561
Target Start/End: Complemental strand, 42086436 - 42086285
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| |||   ||||| ||||||| | ||| |||||| | |||||||||||| |||| |||||||  |||||  ||||||    
T  42086436 gctttcgcaccggtttccgacccaccaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttccccctgggaatcga 42086337  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||| ||||||| |  |||||| |||||||||||||||||| |||||||||    
T  42086336 acccggtattcctcgggtacgtccttggaaggagctccttgccaccggagcc 42086285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 410 - 576
Target Start/End: Original strand, 23247350 - 23247515
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||| || |||||||   ||||| ||||||||| |||||||||| | ||||||  ||||||||| |||||||   ||||  ||||||    
T  23247350 gctttcgcaccggttttcga-ccatcaaaggtggacgactaatctggctcgtgcgtagaggcatgcatactgatcaagcgttgttcctcctgggaatcga 23247448  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttgtttg 576  Q
    ||||||||||||     |||||| |||||| |||||||||||||| | || | | ||||||||||||    
T  23247449 acccgatattccccaggtacgtccttggaatgagctccttgctactgaagtccaaacaacttgtttg 23247515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 410 - 572
Target Start/End: Complemental strand, 1538540 - 1538378
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| ||||  ||||| | ||||| | ||| |||||| | ||||||||||||  |||  ||||||  |||||  ||||||    
T  1538540 gctttcgcaccggtttccgacccaccaatggtggacgattaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatcga 1538441  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||| ||||||  ||||||||| | |||||||||||||||| || |||||| | ||||||||    
T  1538440 acccggtattccccgaatacgtcctcggaaggagctccttgccactggagcccaaacaacttg 1538378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 551
Target Start/End: Original strand, 7308370 - 7308503
Alignment:
Q  418 accggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgata 517  Q
    ||||||||||||||||||||   ||  | ||||||| | ||| |||||| | ||||| ||||||  ||| |||||||  |||||  ||||||||||||||    
T  7308370 accggtttttgatccatcaaaggtgagcgactaatccggctcatgcgtagaggcatgtgcactgcccaagcgttgttccccctgggaatcgaacccgata 7308469  T
Q  518 ttccttgaatacgtctttggaaggagctccttgc 551  Q
    |||||  |||||||| |||||| |||||||||||    
T  7308470 ttcctcaaatacgtccttggaatgagctccttgc 7308503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 532
Target Start/End: Complemental strand, 21149842 - 21149721
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||||||| |||||||  ||||| ||||  ||| | |||||||  ||||||||||| |  ||||||||||| ||||||||||||  ||||||||||||||    
T  21149842 ctttcgcatcggttttctatccaccaatggtgggcgactaatccaactcgtgcgtagagtcatgcgcactggtcaaacgttgttccccctgaaaatcgaa 21149743  T
Q  511 cccgatattccttgaatacgtc 532  Q
    || | |||||||  ||||||||    
T  21149742 cctggtattcctcaaatacgtc 21149721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 494
Target Start/End: Complemental strand, 7617029 - 7616945
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgtt 494  Q
    ||||||||||| ||||  |||||| ||||||||||| ||||||||||||| |||||| | ||||||  |||| ||||||||||||    
T  7617029 gctttcgcaccagtttccgatccaccaataatggacgactaatctgactcatgcgtagaggcatgcatactggtcaaacgttgtt 7616945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 410 - 532
Target Start/End: Complemental strand, 7336728 - 7336607
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||||||||||||||| ||||| |||   | ||| | ||||| | |||||||||| | |||||||||||||| || ||||||| ||| |  |||||||    
T  7336728 gctttcgcaccggttttt-atccaccaaaggtagacgattaatccggctcgtgcgtagaggcatgcgcactgataaagcgttgttctccttagaaatcga 7336630  T
Q  510 acccgatattccttgaatacgtc 532  Q
    ||||||||||||| | |||||||    
T  7336629 acccgatattcctcggatacgtc 7336607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 457 - 551
Target Start/End: Complemental strand, 24875407 - 24875313
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    |||||||||| |  ||||||||||| |||||||||||| ||||| | ||||||||| ||||||| |||  |||||| ||||||  ||||||||||    
T  24875407 ctcgtgcgtagagacatgcgcactggtcaaacgttgttctccctaagaatcgaacctgatattctttgggtacgtccttggaataagctccttgc 24875313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 447 - 561
Target Start/End: Original strand, 25417218 - 25417332
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||||| |||| | ||||||||||||  ||| |||||||  |||||  ||||||||||| ||||||  || |||||| |||||||||||||    
T  25417218 actaatccggctcgttcgtagaggcatgcgcactggccaagcgttgttccccctgggaatcgaacccggtattccccgagtacgtccttggaaggagctc 25417317  T
Q  547 cttgctaccggagcc 561  Q
    ||||| || ||||||    
T  25417318 cttgccactggagcc 25417332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 498 - 560
Target Start/End: Complemental strand, 28862846 - 28862784
Alignment:
Q  498 cctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagc 560  Q
    ||||| ||||||||| ||||||||  |||||||||||||||||||||||||||| || |||||    
T  28862846 cctgagaatcgaacctgatattccccgaatacgtctttggaaggagctccttgccactggagc 28862784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 440 - 572
Target Start/End: Complemental strand, 1826937 - 1826804
Alignment:
Q  440 atggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttc-cctgaaaatcgaacccgatattccttgaatacgtctttgga 538  Q
    |||||| |||||||||| ||||||  | | ||||| ||| ||  ||| |||||||| | ||||| ||||||||| ||||||||  || ||||||||||||    
T  1826937 atggacgactaatctgattcgtgctcagaggcatgtgcagtggccaagcgttgtttcctcctgagaatcgaacctgatattccccgagtacgtctttgga 1826838  T
Q  539 aggagctccttgctaccggagcctagacaacttg 572  Q
    |||||||| ||||||| | |||| | ||||||||    
T  1826837 aggagctcattgctactgaagcccaaacaacttg 1826804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 551
Target Start/End: Complemental strand, 8513628 - 8513487
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  || ||| |||   ||||| ||||||||| |||||||||| | ||||| ||||||  ||| | |||||| ||||   ||||||    
T  8513628 gctttcgcaccggtttccgacccaccaaaggtggacgactaatctggctcgtgcgtagaggcatgtgcactggccaagcattgtttcccctaggaatcga 8513529  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||| ||||||  |  |||||| ||||||||||||||||||    
T  8513528 acccggtattccccgggtacgtccttggaaggagctccttgc 8513487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 551
Target Start/End: Original strand, 11845859 - 11845940
Alignment:
Q  470 gcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||||||||||  |||||||||||  ||||  ||||||||||||||||| || |  |||||| ||||||||||||||||||    
T  11845859 gcatgcgcactggccaaacgttgttccccctcgaaatcgaacccgatatttctcgggtacgtccttggaaggagctccttgc 11845940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 441 - 550
Target Start/End: Original strand, 35638062 - 35638171
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||| |||||||||||||||||||| | | |||| |||||| |||||||||||   |||||||||||||  | |||||||   ||||||||  ||||||    
T  35638062 tggacgactaatctgactcgtgcgtagaggtatgcacactgaccaaacgttgttcctcctgaaaatcgaattcaatattccccaaatacgtccctggaag 35638161  T
Q  541 gagctccttg 550  Q
    ||| ||||||    
T  35638162 gagttccttg 35638171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 521
Target Start/End: Complemental strand, 20705621 - 20705561
Alignment:
Q  461 tgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattcc 521  Q
    |||||| | ||||||||||||| ||||||||||| ||||||||||| ||| ||||||||||    
T  20705621 tgcgtagaggcatgcgcactgaccaaacgttgttctccctgaaaattgaatccgatattcc 20705561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 494
Target Start/End: Complemental strand, 21375460 - 21375376
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgtt 494  Q
    |||||||||| |||||  ||||||||||  |||||| ||||||| ||||| |||||| | |||||||||||| ||||| ||||||    
T  21375460 gctttcgcactggtttccgatccatcaaagatggacgactaatccgactcatgcgtagaagcatgcgcactggtcaaatgttgtt 21375376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 549
Target Start/End: Complemental strand, 21487666 - 21487587
Alignment:
Q  470 gcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctcctt 549  Q
    |||||||||||   |||||||||||   |||||||||||||| |||||||||| || ||| || ||||||||||||||||    
T  21487666 gcatgcgcactagccaaacgttgttcctcctgaaaatcgaactcgatattcctcgagtacatcattggaaggagctcctt 21487587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 551
Target Start/End: Complemental strand, 13664330 - 13664228
Alignment:
Q  449 taatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctcct 548  Q
    ||||||| ||| |||||| | ||||||||||||  |||  ||||||  |||||| ||||||| ||| |||||| |  ||||||| |||||||||||||||    
T  13664330 taatctggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgataatcgaatccggtattccctagatacgtccttggaaggagctcct 13664231  T
Q  549 tgc 551  Q
    |||    
T  13664230 tgc 13664228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 551
Target Start/End: Original strand, 14588646 - 14588756
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||| ||||||| | ||| |||||| | |||||||||||| |||| |||| ||   ||||||||||||||||||||||||    ||||||| ||| |||    
T  14588646 tggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttattcctcctgaaaatcgaacccgatattccccagatacgtccttgaaag 14588745  T
Q  541 gagctccttgc 551  Q
     ||||||||||    
T  14588746 aagctccttgc 14588756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 572
Target Start/End: Original strand, 18136338 - 18136440
Alignment:
Q  470 gcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaac 569  Q
    |||||| |||||| |||  ||||||  |||||  ||||||||||| |||||   | |||||||||||||||||||||||||| || |||||| | |||||    
T  18136338 gcatgcacactgaccaagtgttgttccccctgggaatcgaacccggtattctccggatacgtctttggaaggagctccttgccactggagcccaaacaac 18136437  T
Q  570 ttg 572  Q
    |||    
T  18136438 ttg 18136440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 554
Target Start/End: Complemental strand, 24499061 - 24498948
Alignment:
Q  440 atggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaa 539  Q
    |||||| | ||||| | ||||| |||| | ||||||||||||||||| |||| |||||   |||| |||||||||||||||     ||||||| ||||||    
T  24499061 atggactattaatccggctcgtacgtagaggcatgcgcactgatcaagcgttattttcttagaaa-tcgaacccgatattctccagatacgtccttggaa 24498963  T
Q  540 ggagctccttgctac 554  Q
    |||||||||||||||    
T  24498962 ggagctccttgctac 24498948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 445 - 550
Target Start/End: Original strand, 35245039 - 35245144
Alignment:
Q  445 caactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagc 544  Q
    ||||||||| | ||| |||||| | |||||| ||||| ||||||||||||  | |||||||| |||| | |||||||| | ||| ||| || ||||||||    
T  35245039 caactaatcaggctcatgcgtagaagcatgcacactggtcaaacgttgttccctctgaaaattgaactcaatattcctcggatatgtccttagaaggagc 35245138  T
Q  545 tccttg 550  Q
    ||||||    
T  35245139 tccttg 35245144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 412 - 561
Target Start/End: Complemental strand, 37263347 - 37263199
Alignment:
Q  412 tttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaac 511  Q
    ||||||||||||||  ||||||  ||   ||||| ||||||| | |||||||||| | ||||||||| ||  ||| |||||||  |||||| ||||||||    
T  37263347 tttcgcaccggtttccgatccaataaaggtggacgactaatccggctcgtgcgtagaggcatgcgcattggccaagcgttgttc-ccctgagaatcgaac 37263249  T
Q  512 ccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||||||||  |  |||||| || |||||| |||||||| || ||||||    
T  37263248 ccgatattccccgggtacgtccttagaaggaactccttgccactggagcc 37263199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 38897717 - 38897857
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||||||| |||||  |||||| |||   ||| ||||||||| | |||||||||| | ||||||||||||  ||| ||||| || ||||| |||||||    
T  38897717 gctttcgcactggtttccgatccaccaaaggtgggcaactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttg-ttcccctggaaatcga 38897815  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||| ||||||    ||||||| ||| || |||||||||||    
T  38897816 acccggtattccccatatacgtccttgtaaagagctccttgc 38897857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 494
Target Start/End: Original strand, 3653912 - 3653996
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgtt 494  Q
    ||||| ||||||||||| |||||| |||   ||||| ||||||| | |||||||||| | |||||||||||| |||| |||||||    
T  3653912 gcttttgcaccggttttcgatccaccaaaggtggacgactaatccgcctcgtgcgtagaggcatgcgcactggtcaagcgttgtt 3653996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 551
Target Start/End: Complemental strand, 16755109 - 16755029
Alignment:
Q  471 catgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    |||||||||||  |||  |||||||  ||||||||||||||||  ||||||  | |||||||||||||| |||||||||||    
T  16755109 catgcgcactggccaagtgttgtttctcctgaaaatcgaacccagtattccccggatacgtctttggaaagagctccttgc 16755029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 521
Target Start/End: Complemental strand, 28615311 - 28615248
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattcc 521  Q
    |||||||||| |||| |||||| ||||||| ||||||||| ||||| |||| |||||||||||||    
T  28615311 ctcgtgcgtagatgcgtgcgcaatgatcaagcgttgtttt-cctgagaatcaaacccgatattcc 28615248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 534
Target Start/End: Complemental strand, 40117524 - 40117400
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||| |||||| |||   || || | ||||| | ||| |||||| | ||||||||||||  ||| |||||||  ||||| |||||||    
T  40117524 gctttcgcaccggttttcgatccaccaaaggtgaacgattaatccggctcatgcgtagaggcatgcgcactggccaagcgttgttccccctggaaatcga 40117425  T
Q  510 acccgatattccttgaatacgtctt 534  Q
    |  |||||||||  |||||||||||    
T  40117424 attcgatattccccgaatacgtctt 40117400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 572
Target Start/End: Original strand, 4016288 - 4016415
Alignment:
Q  445 caactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagc 544  Q
    ||||||||| | |||||| ||| | ||||||||||||  |||  ||||||  |||||| |||||||||||||||| ||    |||||| |||||| ||||    
T  4016288 caactaatccggctcgtgtgtagaggcatgcgcactggccaagtgttgttccccctgataatcgaacccgatatttctcaggtacgtccttggaatgagc 4016387  T
Q  545 tccttgctaccggagcctagacaacttg 572  Q
    | ||||| || |||||| | ||||||||    
T  4016388 ttcttgccactggagcccatacaacttg 4016415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 521
Target Start/End: Original strand, 18262616 - 18262727
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||||||||| |||| |||||||||    ||| | ||||||| | |||||| ||| | | |||||||||| |||| |||||||  |||||||||| ||    
T  18262616 gctttcgcaccgattttcgatccatcagaggtgggcgactaatccggctcgtgtgtagaggtatgcgcactggtcaagcgttgttccccctgaaaataga 18262715  T
Q  510 acccgatattcc 521  Q
    ||||| ||||||    
T  18262716 acccggtattcc 18262727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 551
Target Start/End: Complemental strand, 20223071 - 20223024
Alignment:
Q  504 aatcgaacccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||||||||||||||||    ||||||||||||||||||||||||||    
T  20223071 aatcgaacccgatattccccagatacgtctttggaaggagctccttgc 20223024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 512
Target Start/End: Original strand, 22655186 - 22655257
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacc 512  Q
    ||||| ||||||||||||  |||||| | |||||| |||||||||||| |||||| |||||  |||||||||    
T  22655186 tggacgactaatctgacttatgcgtagaggcatgcacactgatcaaacattgtttcccctgggaatcgaacc 22655257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 572
Target Start/End: Complemental strand, 5079439 - 5079278
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||| || ||| |||   ||| | ||||||| | |||||||||| | ||||||||| ||| ||| || ||||  ||||| ||||| |    
T  5079439 gctttcgcaccggttttcga-ccaccaaaggtgggcgactaatccggctcgtgcgtagaagcatgcgcattgaccaagcgctgttccccctggaaatcaa 5079341  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
     |||| ||||||  | ||||||  ||||||||||||| |||| |||||| || | ||||||||    
T  5079340 ccccggtattccacggatacgtgcttggaaggagctctttgccaccggaacccaaacaacttg 5079278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 561
Target Start/End: Original strand, 5731955 - 5732069
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||||| ||| | |||| | ||||||||||||  ||| |||||||   ||||  ||||||||||| ||||||  |  |||||| |||||||||||||    
T  5731955 actaatctggctcatacgtagaggcatgcgcactggccaagcgttgttcctcctgggaatcgaacccggtattccccgggtacgtccttggaaggagctc 5732054  T
Q  547 cttgctaccggagcc 561  Q
    ||||| || ||||||    
T  5732055 cttgccactggagcc 5732069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 561
Target Start/End: Complemental strand, 19572796 - 19572682
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | ||||||||||||  |||  ||||||  |||||  |||| |||||| ||||||  | ||||||| |||||||||||||    
T  19572796 actaatccggctcatgcgtagaggcatgcgcactggccaagtgttgttccccctgggaatctaacccggtattccccggatacgtccttggaaggagctc 19572697  T
Q  547 cttgctaccggagcc 561  Q
    ||||| || ||||||    
T  19572696 cttgccactggagcc 19572682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 521
Target Start/End: Complemental strand, 38369771 - 38369698
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattcc 521  Q
    ||||||| |||||||||||| | ||||||||||||  |||  |||| || |||||| ||||||||||||||||||    
T  38369771 actaatccgactcgtgcgtagaggcatgcgcactggccaagtgttg-ttcccctgagaatcgaacccgatattcc 38369698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 542
Target Start/End: Complemental strand, 12081970 - 12081885
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaagga 542  Q
    |||||||||| ||||||||||||||  ||| |||||||  |||||| ||||||||||  ||||||  | ||||||| || ||||||    
T  12081970 ctcgtgcgtagatgcatgcgcactggccaagcgttgttccccctgagaatcgaacccagtattccccggatacgtcctttgaagga 12081885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 579
Target Start/End: Complemental strand, 23383641 - 23383588
Alignment:
Q  526 atacgtctttggaaggagctccttgctaccggagcctagacaacttgtttgtta 579  Q
    ||||||| |||||||||||||||||| || |||||| | |||||||| ||||||    
T  23383641 atacgtccttggaaggagctccttgccactggagcccaaacaacttggttgtta 23383588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 521
Target Start/End: Original strand, 24653871 - 24653920
Alignment:
Q  472 atgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattcc 521  Q
    ||||||||||| |||  |||||| |||||||||||||||||| |||||||    
T  24653871 atgcgcactgaccaagtgttgttctccctgaaaatcgaaccctatattcc 24653920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 572
Target Start/End: Complemental strand, 7736914 - 7736818
Alignment:
Q  476 gcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||||| ||||||||||||  ||||| |||||||| |||||||||| |  |||||| || ||| || || ||||| ||| |||||||  |||||||    
T  7736914 gcactgaccaaacgttgtttgtcctgagaatcgaactcgatattcctcgggtacgtccttagaatgatcttcttgccaccagagcctaaccaacttg 7736818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 551
Target Start/End: Complemental strand, 18327786 - 18327738
Alignment:
Q  503 aaatcgaacccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    |||||||||||  |||| | |||||||||| ||||||||||||||||||    
T  18327786 aaatcgaacccagtatttcctgaatacgtccttggaaggagctccttgc 18327738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 519
Target Start/End: Complemental strand, 19839399 - 19839327
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatatt 519  Q
    |||||||||||||||  ||| | ||||||||||||||||| |||||||   ||||||||| ||| ||| ||||    
T  19839399 actaatctgactcgtatgtagaggcatgcgcactgatcaagcgttgttcctcctgaaaattgaatccggtatt 19839327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 571
Target Start/End: Original strand, 25950641 - 25950741
Alignment:
Q  471 catgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaact 570  Q
    |||||||||||  |||  ||||||| || |||||||| |||| ||||||||  || |||||| || ||||||||||||| | || |||||| | ||||||    
T  25950641 catgcgcactggccaagtgttgtttcccttgaaaatcaaacctgatattccccgagtacgtcctttgaaggagctccttaccactggagcccaaacaact 25950740  T
Q  571 t 571  Q
    |    
T  25950741 t 25950741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 520
Target Start/End: Original strand, 42291505 - 42291613
Alignment:
Q  412 tttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaac 511  Q
    ||||||||||||||  ||||||||||   ||||| ||||||| | |||||||||| | ||||| ||||||  ||| |||||||  |||||  |||| |||    
T  42291505 tttcgcaccggtttccgatccatcaaaggtggacgactaatccggctcgtgcgtagaggcatgtgcactggccaagcgttgttcaccctgggaatcaaac 42291604  T
Q  512 ccgatattc 520  Q
    ||| |||||    
T  42291605 ccggtattc 42291613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 451 - 551
Target Start/End: Complemental strand, 20240641 - 20240541
Alignment:
Q  451 atctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttg 550  Q
    |||||||||||||||| | ||||||||||||| |||||||| |||| |||| ||||||||| ||||||||| |  ||||||| |||||| |||||| |||    
T  20240641 atctgactcgtgcgtagaggcatgcgcactgaccaaacgttatttttcctggaaatcgaactcgatattccctagatacgtccttggaatgagctctttg 20240542  T
Q  551 c 551  Q
    |    
T  20240541 c 20240541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 451 - 551
Target Start/End: Original strand, 20252426 - 20252526
Alignment:
Q  451 atctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttg 550  Q
    |||||||||||||||| | ||||||||||||| |||||||| |||| |||| ||||||||| ||||||||| |  ||||||| |||||| |||||| |||    
T  20252426 atctgactcgtgcgtagaggcatgcgcactgaccaaacgttatttttcctggaaatcgaactcgatattccctagatacgtccttggaatgagctctttg 20252525  T
Q  551 c 551  Q
    |    
T  20252526 c 20252526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 461 - 572
Target Start/End: Complemental strand, 8141163 - 8141052
Alignment:
Q  461 tgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagc 560  Q
    |||||| | ||||||||||||  ||| |||||||| ||||| |||||||||||| ||||||  ||||||||| ||||||| |||||||||| || |||||    
T  8141163 tgcgtagaggcatgcgcactggccaagcgttgtttcccctggaaatcgaacccggtattccccgaatacgtccttggaagcagctccttgccactggagc 8141064  T
Q  561 ctagacaacttg 572  Q
    | | ||||||||    
T  8141063 ccaaacaacttg 8141052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 410 - 572
Target Start/End: Original strand, 3418511 - 3418673
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||||||||||||| ||| |||  ||   ||||| ||||||||||||| |||||| | ||||||||||||  |||  ||||||   ||| ||||||||    
T  3418511 gctttcgcaccggtttctgacccactaaaggtggacgactaatctgactcatgcgtagacgcatgcgcactggccaagtgttgttcctcctaaaaatcga 3418610  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||||||||||    ||||||| |||||||||||||||||| || |||| | | ||||||||    
T  3418611 acccgatattccccagatacgtccttggaaggagctccttgccacgggagtccaaacaacttg 3418673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 447 - 571
Target Start/End: Original strand, 33401834 - 33401958
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| ||||| |||||| | |||||| ||||| ||||  ||||||  |||||||||||||||||| ||||||  || |||||| ||| |||||||||    
T  33401834 actaatccgactcatgcgtagaggcatgcacactggtcaagtgttgttccccctgaaaatcgaacccggtattccccgagtacgtccttgaaaggagctc 33401933  T
Q  547 cttgctaccggagcctagacaactt 571  Q
    ||||| || |||||| | |||||||    
T  33401934 cttgccactggagcccaaacaactt 33401958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 572
Target Start/End: Complemental strand, 583924 - 583764
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||||||||||||| | |||||||||   ||| | ||||||| ||||| |||||| | |||||||||||| |||| |||||  ||||||   ||||||    
T  583924 gctttcgcaccggtttctaatccatcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttg--ttccctaggaatcga 583827  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||| |||| || || |||||| ||||||| |||||||||| ||  ||||| | ||||||||    
T  583826 acccggtatttctcgagtacgtccttggaagtagctccttgccactagagcccaaacaacttg 583764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 561
Target Start/End: Original strand, 14666069 - 14666220
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||| || ||| |||   ||| | ||||||||| || ||||||| | ||||||||||||  |||  ||||||| |||||  ||||||    
T  14666069 gctttcgcaccggttttcgacccaccaactgtgggcgactaatctggcttgtgcgtagaggcatgcgcactggccaagtgttgtttcccctgggaatcga 14666168  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||| ||||||  | ||||||| |||||| ||||||||||| || ||||||    
T  14666169 acccggtattccccggatacgtccttggaatgagctccttgccactggagcc 14666220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 560
Target Start/End: Complemental strand, 30903408 - 30903298
Alignment:
Q  449 taatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctcct 548  Q
    |||||||||| ||| |||   |||||||||||| |||| | |||||| |||||||||||||| ||| ||||||  ||||||||| ||||||| |||||||    
T  30903408 taatctgacttgtgtgtagcggcatgcgcactggtcaagcattgttt-ccctgaaaatcgaatccggtattccccgaatacgtcattggaagaagctcct 30903310  T
Q  549 tgctaccggagc 560  Q
    | |||| |||||    
T  30903309 tactactggagc 30903298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 551
Target Start/End: Complemental strand, 18374121 - 18373981
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||| ||||||||||| || ||| |||   ||||| ||||||| | ||| |||||| | |||||||||||| |||| ||||||| ||||||| |||||||    
T  18374121 cttttgcaccggttttcgacccaccaaagttggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgttctccctgagaatcgaa 18374022  T
Q  511 cccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    || | |||| |  | |||  ||||||||| |||||||||||    
T  18374021 cctggtatttcccggatatatctttggaatgagctccttgc 18373981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 561
Target Start/End: Original strand, 35496300 - 35496403
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccg 556  Q
    ||||| |||| | ||||||||||||| |||  ||||||| | |||||||| ||||| ||||||||| | ||||||| ||| || ||||||||||| ||||    
T  35496300 ctcgtacgtagaggcatgcgcactgaccaagtgttgtttcctctgaaaattgaacctgatattcctcg-atacgtccttgaaatgagctccttgccaccg 35496398  T
Q  557 gagcc 561  Q
    |||||    
T  35496399 gagcc 35496403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 410 - 561
Target Start/End: Original strand, 2467116 - 2467267
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    ||||||||||||||||  ||  || ||||  ||||| ||||||| | ||| ||| || |  |||||||||||  |||  ||||||  ||||| |||||||    
T  2467116 gctttcgcaccggtttccgacacaccaattgtggacgactaatccggctcatgcatagagacatgcgcactggccaagagttgttccccctggaaatcga 2467215  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcc 561  Q
    ||||| ||||||  | ||||||| |||||||||||||||||| || ||||||    
T  2467216 acccggtattccccggatacgtccttggaaggagctccttgccactggagcc 2467267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 447 - 572
Target Start/End: Original strand, 33935770 - 33935895
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| ||||| |||||||| ||||||||||||  |||  |||||| |||||   ||||||| ||| |||||||||  ||| || ||  |||||||||    
T  33935770 actaatccgactcatgcgtataggcatgcgcactggccaagtgttgttctccctaggaatcgaatccggtattccttgggtacatccttaaaaggagctc 33935869  T
Q  547 cttgctaccggagcctagacaacttg 572  Q
    ||||| || |||||| | ||||||||    
T  33935870 cttgcaactggagcccaaacaacttg 33935895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 549
Target Start/End: Complemental strand, 36662430 - 36662377
Alignment:
Q  497 ccctgaaaatcgaacccgatattccttgaatacgtctttgg-aaggagctcctt 549  Q
    |||||||||||||||||||||||||| | ||||||| |||| ||||||||||||    
T  36662430 ccctgaaaatcgaacccgatattcctcgtatacgtccttggaaaggagctcctt 36662377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 560
Target Start/End: Original strand, 68170 - 68246
Alignment:
Q  484 caaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagc 560  Q
    |||||||||||   ||||| ||||||||||||| ||||  ||  ||||| |||||||||||||||||| ||||||||    
T  68170 caaacgttgttcctcctgagaatcgaacccgatcttccccgagcacgtccttggaaggagctccttgccaccggagc 68246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 561
Target Start/End: Complemental strand, 13085597 - 13085485
Alignment:
Q  449 taatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctcct 548  Q
    ||||||| |||||||||| | | |||| |||||   ||||||||||  | |||| ||||||||||| ||||||  | ||||||| |||||||||||||||    
T  13085597 taatctggctcgtgcgtagaggtatgcacactggctaaacgttgttccctctgagaatcgaacccggtattccccggatacgtccttggaaggagctcct 13085498  T
Q  549 tgctaccggagcc 561  Q
     || || ||||||    
T  13085497 cgccactggagcc 13085485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 561
Target Start/End: Original strand, 38922459 - 38922563
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccg 556  Q
    |||||||||| | ||||||||||||  ||| |||||||  | |||  ||||||||||| ||||||  |  |||||| |||||||||||||||||| || |    
T  38922459 ctcgtgcgtaaaggcatgcgcactggccaagcgttgttccctctgggaatcgaacccggtattccccgggtacgtccttggaaggagctccttgccactg 38922558  T
Q  557 gagcc 561  Q
    |||||    
T  38922559 gagcc 38922563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 2209834 - 2209755
Alignment:
Q  471 catgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttg 550  Q
    |||||||||||| |||| ||||||| |||| | |||| ||||||||||||||   | ||||| || ||||||||||||||    
T  2209834 catgcgcactgaccaaatgttgtttcccctaagaatcaaacccgatattcctcagacacgtccttagaaggagctccttg 2209755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 572
Target Start/End: Complemental strand, 14846656 - 14846526
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||| ||| ||||||||| |||||| | ||||||||||||| ||| | ||| || |||||| ||||||||||| ||||||  |  |||||| || ||||    
T  14846656 tggacgacttatctgactcatgcgtagaggcatgcgcactgaccaatcattg-ttcccctgagaatcgaacccggtattccccgggtacgtccttagaag 14846558  T
Q  541 gagctccttgctaccggagcctagacaacttg 572  Q
    ||||| ||||| |  |||||| | ||||||||    
T  14846557 gagcttcttgccagtggagcccaaacaacttg 14846526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 520
Target Start/End: Original strand, 13831072 - 13831121
Alignment:
Q  470 gcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattc 520  Q
    ||||||||| || |||||||||||||| ||||||||||||||| |||||||    
T  13831072 gcatgcgcattggtcaaacgttgtttt-cctgaaaatcgaacctgatattc 13831121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 480
Target Start/End: Original strand, 39969913 - 39969983
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcact 480  Q
    ||||||||| ||||||  ||||||||||| |||| | ||||||||||||| || ||| | |||||||||||    
T  39969913 gctttcgcatcggtttccgatccatcaatgatgggcgactaatctgactcatgtgtagaggcatgcgcact 39969983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 572
Target Start/End: Original strand, 10535463 - 10535563
Alignment:
Q  471 catgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaact 570  Q
    ||||||||||| |||| || ||||  |||||||||| |||||   ||||||| | ||||||| |||||||||||||||||| || |||| | | ||||||    
T  10535463 catgcgcactggtcaagcggtgttc-ccctgaaaattgaaccatgtattcctcggatacgtccttggaaggagctccttgccactggagtccaaacaact 10535561  T
Q  571 tg 572  Q
    ||    
T  10535562 tg 10535563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 561
Target Start/End: Complemental strand, 17981518 - 17981402
Alignment:
Q  445 caactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagc 544  Q
    ||||||||  |||||||||||| | |||||| ||||| ||||  ||||||  |||||  ||||||||||| |||| |  |  ||| || |||||||||||    
T  17981518 caactaattcgactcgtgcgtagaggcatgcacactggtcaagagttgttccccctgggaatcgaacccggtatttcccgggtacatccttggaaggagc 17981419  T
Q  545 tccttgctaccggagcc 561  Q
    ||||||| || ||||||    
T  17981418 tccttgccactggagcc 17981402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 570
Target Start/End: Complemental strand, 43033013 - 43032853
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||||||||||||| ||| ||| |||   ||| | ||||||| | |||||| ||| | ||||||||||||  ||| |||||||  |||||  ||||||    
T  43033013 gctttcgcaccggtttctgacccaccaaaggtgggcgactaatccggctcgtgtgtagaggcatgcgcactggccaagcgttgttccccctgggaatcga 43032914  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaact 570  Q
    | |||||||| |    |||| | |||||||||| |||||||| || |||||| | ||||||    
T  43032913 atccgatatttcccagatacatttttggaaggaactccttgccactggagcccaaacaact 43032853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 447 - 577
Target Start/End: Complemental strand, 41118 - 40988
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | |||||||||| | |||||| |||||| |||  ||||||  || ||| |||||||||||||||||| ||| ||||||  ||||||||||||    
T  41118 actaatccggctcgtgcgtagaggcatgcacactgaccaagtgttgttccccttgagaatcgaacccgatattccctgagtacgtccatggaaggagctc 41019  T
Q  547 cttgctaccggagcctagacaacttgtttgt 577  Q
    ||||| || |||||| | |||||||| ||||    
T  41018 cttgccactggagcccaaacaacttggttgt 40988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 411 - 551
Target Start/End: Complemental strand, 224427 - 224287
Alignment:
Q  411 ctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaa 510  Q
    |||||||||||||||  || ||| |||  |||||| ||||||| | |||||||||| | | ||| |||||||||||||||| || ||||||| | |||||    
T  224427 ctttcgcaccggtttccgacccaccaaagatggacgactaatccggctcgtgcgtagaggtatgtgcactgatcaaacgttattctccctgagattcgaa 224328  T
Q  511 cccgatattccttgaatacgtctttggaaggagctccttgc 551  Q
    ||||||||||   ||||||||| || ||||  |||||||||    
T  224327 cccgatattctccgaatacgtccttagaagatgctccttgc 224287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 520
Target Start/End: Complemental strand, 186591 - 186519
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattc 520  Q
    ||||||| | |||||||||| | ||||| ||||||| ||||| || || ||||||||| |||||||||||||||    
T  186591 actaatccggctcgtgcgtagaggcatgtgcactgaccaaacattattctccctgaaa-tcgaacccgatattc 186519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 572
Target Start/End: Complemental strand, 12684 - 12524
Alignment:
Q  410 gctttcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcga 509  Q
    |||||||||||||||| | |||||||||   ||| | ||||||| ||||| |||||| | |||||||||||| |||| |||||  ||||||   ||||||    
T  12684 gctttcgcaccggtttctaatccatcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttg--ttccctaggaatcga 12587  T
Q  510 acccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    ||||| |||| || || |||||| ||||||| |||||||||| ||  ||||| | ||||||||    
T  12586 acccggtatttctcgagtacgtccttggaagtagctccttgccactagagcccaaacaacttg 12524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 447 - 549
Target Start/End: Complemental strand, 16953 - 16851
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||||| |||||||||| |  ||| |||||||| ||| |||||||| |||||| ||| |||||| ||||||| ||||| | || |||||||||||||    
T  16953 actaatctggctcgtgcgtagagacatacgcactgaccaagcgttgtttcccctgagaattgaacccaatattccctgaatgcatccttggaaggagctc 16854  T
Q  547 ctt 549  Q
    |||    
T  16853 ctt 16851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 457 - 583
Target Start/End: Original strand, 271119 - 271245
Alignment:
Q  457 ctcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccg 556  Q
    |||||||||| |  |||||||||||| ||| |||||||  |||||  |||||||||||||||||   |  |||||| |||||||||||||||||| |||     
T  271119 ctcgtgcgtagagacatgcgcactgaccaagcgttgttccccctgggaatcgaacccgatattctccgggtacgtccttggaaggagctccttgccacca 271218  T
Q  557 gagcctagacaacttgtttgttaatat 583  Q
    ||||| |  ||||||| |||| |||||    
T  271219 gagcccaagcaacttggttgtcaatat 271245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 545
Target Start/End: Original strand, 249340 - 249438
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagct 545  Q
    ||||||| |||||||||||| | | ||| |||||| |||| |||| || ||||||| ||||||||| | ||||||   |||||||| || |||||||||    
T  249340 actaatccgactcgtgcgtagaggtatgtgcactggtcaagcgttattctccctgagaatcgaacctggtattccccaaatacgtccttagaaggagct 249438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 441 - 550
Target Start/End: Complemental strand, 9925 - 9816
Alignment:
Q  441 tggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaag 540  Q
    ||||| ||||||| | |||||||||| | ||||||||||||  ||| |||||||  ||||| |||||||| ||| |||||||   |||| || |||||||    
T  9925 tggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctggaaatcgaatccggtattcctcagatacatccttggaag 9826  T
Q  541 gagctccttg 550  Q
    ||||||||||    
T  9825 gagctccttg 9816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 550
Target Start/End: Complemental strand, 72683 - 72604
Alignment:
Q  470 gcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttg 550  Q
    |||||||||||| |||| |||||||  || || |||||||||||| |||||| || ||||||| |||||||||||||||||    
T  72683 gcatgcgcactggtcaagcgttgttccccttggaaatcgaacccggtattccctg-atacgtccttggaaggagctccttg 72604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 551
Target Start/End: Complemental strand, 644 - 540
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||||| ||| | |||| | |||||| ||||||||||  ||||||  |||||  ||||||||||| ||||||  |  |||||| |||||||||||||    
T  644 actaatctggctcatacgtagaggcatgcacactgatcaagtgttgttccccctgcgaatcgaacccggtattccccgggtacgtccttggaaggagctc 545  T
Q  547 cttgc 551  Q
    |||||    
T  544 cttgc 540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 564
Target Start/End: Complemental strand, 319471 - 319379
Alignment:
Q  472 atgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctccttgctaccggagcctag 564  Q
    ||||||||||  ||| |||||||  ||||  ||||| |||||| ||||||  | ||||||| |||||||||||||||||| || |||||||||    
T  319471 atgcgcactggccaagcgttgttccccctagaaatcaaacccggtattccccggatacgtccttggaaggagctccttgccactggagcctag 319379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 579
Target Start/End: Original strand, 8824 - 8877
Alignment:
Q  526 atacgtctttggaaggagctccttgctaccggagcctagacaacttgtttgtta 579  Q
    ||||||| |||||||||||||||||| || |||||| | |||||||| ||||||    
T  8824 atacgtccttggaaggagctccttgccactggagcccaaacaacttggttgtta 8877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 551
Target Start/End: Original strand, 95016 - 95118
Alignment:
Q  447 actaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaacccgatattccttgaatacgtctttggaaggagctc 546  Q
    ||||||| | ||| |||||| | |||||||||||| |||||||||||||  |||  |||||||||| | ||||||  | |||| |  |||||||||||||    
T  95016 actaatccggctcatgcgtaaaggcatgcgcactggtcaaacgttgttt--cctagaaatcgaacctggtattccccggatactttcttggaaggagctc 95113  T
Q  547 cttgc 551  Q
    |||||    
T  95114 cttgc 95118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 572
Target Start/End: Complemental strand, 68621 - 68466
Alignment:
Q  414 tcgcaccggtttttgatccatcaataatggacaactaatctgactcgtgcgtatatgcatgcgcactgatcaaacgttgttttccctgaaaatcgaaccc 513  Q
    ||||||||||||| || ||| |||   ||| | ||||||| | |||||||||| | ||||||||||    ||| |||||||  |||||  ||||||||||    
T  68621 tcgcaccggttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcacc---caagcgttgttccccctgggaatcgaaccc 68525  T
Q  514 gatattccttgaatacgtctttggaaggagctccttgctaccggagcctagacaacttg 572  Q
    |||||| |  |  |||||| |||||||||||||||||| ||  ||||| | ||||||||    
T  68524 gatatttcccgggtacgtccttggaaggagctccttgccactagagcccaaacaacttg 68466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University