View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11771_low_5 (Length: 502)
Name: NF11771_low_5
Description: NF11771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11771_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 488
Target Start/End: Original strand, 13615293 - 13615771
Alignment:
| Q |
11 |
tgagaaaatgacagttactaaaagactttttctaatcatacaaaatatgagcaacaaccgaaaggagcggcaatggtgatggaagaagaaaa-gggaaca |
109 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13615293 |
tgagaaaatgacagttactaaacgactttttctaatcatacaaaatatgagcaacaaccgaaaggagcggcaatggtgatggaagaagaaaaagggaaca |
13615392 |
T |
|
| Q |
110 |
acttgatccaatcctcttcaaacatctctgcttttttcattctatcgaatgtttagttttggaatatgctctatcttgtcccggtcttcccatcttccct |
209 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |
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| T |
13615393 |
acttgatccaatccttttcaaacatctctgcttttttcattctatcgaatgtttagttttggaatatgcgctatcttgtcccagtcttcccatgttccct |
13615492 |
T |
|
| Q |
210 |
ccttgcatcgcttcttcaatgctgggcatccaaatatattcaacgaatcaagtggaatgaggtgtctaataccgtccgacaggcattttaatttacgaca |
309 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13615493 |
ccttgcatcgcttcttcaatgttgggcatccaaaaatattcaacgaatcaagtgcaatgaggtgtctaataccgtccgacaggcattttaatttacgaca |
13615592 |
T |
|
| Q |
310 |
atgattaatcaccatagattgaagtgattgtcgacctccccataatttctctagtaaatactcaagttcgttgcaaatccggatattaagatgctccaaa |
409 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13615593 |
atgattaatcaccatagattgaagtgattgccgacctccccataatttctctggtaaatactcaagttcgtggcaaatccggatattaagatgctccaaa |
13615692 |
T |
|
| Q |
410 |
gctaggttgaaagattatcatctcctctctttccacttttaacaacctatctaagtttggtaagtcttctattattagt |
488 |
Q |
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| T |
13615693 |
gctaagttgaaagattctcatctcctctctttccacttttaacaacctatctaagtttggtaagtcttctattattagt |
13615771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 125 - 420
Target Start/End: Original strand, 17981491 - 17981785
Alignment:
| Q |
125 |
cttcaaacatctctgcttttttcattctatcgaatgtttagttttggaatatgctctatcttgtcccggtcttcccatcttccctccttgcatcgcttct |
224 |
Q |
| |
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||||||||||||||||||| | ||||||| |||||| |||| ||||||||| |||||||||||| |||||| | ||||||| ||||||||||||| |
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| T |
17981491 |
cttcaaacatctctgctttct-cattctaaggaatgtgcagttctggaatatgggctatcttgtcccagtcttctccggttccctcattgcatcgcttct |
17981589 |
T |
|
| Q |
225 |
tcaatgctgggcatccaaatatattcaacgaatcaagtggaatgaggtgtctaataccgtccgacaggcattttaatttacgacaatgattaatcaccat |
324 |
Q |
| |
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||||| ||||||| || ||| | || |||||||||| | | ||||||||||||||||||| || |||||| ||||| | ||||| | ||||||||| |
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| T |
17981590 |
ccaatgttgggcatgcacgaatagttaatgaatcaagtgcagtaaggtgtctaataccgtccggcaagcatttcaatttcctacaatcaacaatcaccat |
17981689 |
T |
|
| Q |
325 |
agattgaagtgattgtcgacctccccataatttctctagtaaatactcaagttcgttgcaaatccggatattaagatgctccaaagctaggttgaa |
420 |
Q |
| |
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||||||||||||||| |||||||||||| ||||||| ||||||||||||| ||| |||| | ||||| ||||||| ||||||||||||||| |
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| T |
17981690 |
agattgaagtgattgcagacctccccatattttctctggtaaatactcaagctcgctgcacaaattgatatccagatgcttcaaagctaggttgaa |
17981785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 282
Target Start/End: Original strand, 30202743 - 30202854
Alignment:
| Q |
171 |
gaatatgctctatcttgtcccggtcttcccatcttccctccttgcatcgcttcttcaatgctgggcatccaaatatattcaacgaatcaagtggaatgag |
270 |
Q |
| |
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||||||| |||||||||||| || |||| | |||||||||||||||| | ||||||| |||||| || || || ||| | ||||||||| | |||| |
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| T |
30202743 |
gaatatgtgctatcttgtcccagttctcccctgttccctccttgcatcgttccttcaatattgggcaaccgaaaattgtcagcaaatcaagtgaagtgag |
30202842 |
T |
|
| Q |
271 |
gtgtctaatacc |
282 |
Q |
| |
|
|||||||||||| |
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|
| T |
30202843 |
gtgtctaatacc |
30202854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 161 - 375
Target Start/End: Original strand, 7097998 - 7098212
Alignment:
| Q |
161 |
tttagttttggaatatgctctatcttgtcccggtcttcccatcttccctccttgcatcgcttcttcaatgctgggcatccaaatatattcaacgaatcaa |
260 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||| | |||||||||||||||||| | |||||| ||||||||||| ||| |||||||||||| |
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| T |
7097998 |
tttagttttggaatatgggctatcttgtcccagtcttcccctgttccctccttgcatcgctccgtcaatgttgggcatccaacaatagtcaacgaatcaa |
7098097 |
T |
|
| Q |
261 |
gtggaatgaggtgtctaataccgtccgacaggcattttaatttacgacaatgattaatcaccatagattgaagtgattgtcgacctccccataatttctc |
360 |
Q |
| |
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||| |||||||||||||||| || | || |||||||||| | ||||| | |||| |||||||||||||||||| |||||||||||| |||||| |
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|
| T |
7098098 |
gtgcggtgaggtgtctaataccatctggcaagcattttaatctttcacaataagaaatcctcatagattgaagtgattgcagacctccccatattttctc |
7098197 |
T |
|
| Q |
361 |
tagtaaatactcaag |
375 |
Q |
| |
|
| ||||||||||||| |
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|
| T |
7098198 |
tggtaaatactcaag |
7098212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 126 - 420
Target Start/End: Complemental strand, 7583282 - 7582989
Alignment:
| Q |
126 |
ttcaaacatctctgcttttttcattctatcgaatgtttagttttggaatatgctctatcttgtcccggtcttcccatcttccctccttgcatcgcttctt |
225 |
Q |
| |
|
||||||||||||||||| || ||||||| | ||||| ||||||| ||||||| ||||||||| || |||||||| | |||||| ||||||| ||| | | |
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| T |
7583282 |
ttcaaacatctctgcttctt-cattctaactaatgtcaagttttgaaatatgcgctatcttgttccagtcttcccctgttcccttcttgcatagctccgt |
7583184 |
T |
|
| Q |
226 |
caatgctgggcatccaaatatattcaacgaatcaagtggaatgaggtgtctaataccgtccgacaggcattttaatttacgacaatgattaatcaccata |
325 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||||||| | |||||||||||||||| || | || |||||||||||| |||| || |||| ||| |
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| T |
7583183 |
caatattgggcatccagcaatattcaacaaatcaagtgcagtgaggtgtctaataccatctggcaagcattttaattttttacaacaataaatcctcatg |
7583084 |
T |
|
| Q |
326 |
gattgaagtgattgtcgacctccccataatttctctagtaaatactcaagttcgttgcaaatccggatattaagatgctccaaagctaggttgaa |
420 |
Q |
| |
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||||| |||||||| ||||||||||| ||||||| ||||||||||||| || | ||||| |||||| |||||||||||| |||||||||| |
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|
| T |
7583083 |
gattgtagtgattgcaaacctccccatattttctctggtaaatactcaagctcatcgcaaaaagcgatattcagatgctccaaaactaggttgaa |
7582989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 484
Target Start/End: Complemental strand, 7582724 - 7582668
Alignment:
| Q |
428 |
catctcctctctttccacttttaacaacctatctaagtttggtaagtcttctattat |
484 |
Q |
| |
|
|||||||| | |||||||||| ||||||| ||||||||||||||||| || ||||| |
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|
| T |
7582724 |
catctcctttttttccactttcaacaacccctctaagtttggtaagtcatcaattat |
7582668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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