View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11771_low_7 (Length: 433)
Name: NF11771_low_7
Description: NF11771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11771_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Complemental strand, 1751664 - 1751253
Alignment:
| Q |
8 |
cacagacaaacacacaatctttggttacaagccatttcaaaaatgggaaatccgccatacaaagcagtgaatctaggaaactggcttttggctgaggggt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1751664 |
cacagacaaacacacaatctttggttacaagccatttcaaaaatgggaaatccgccatacaaagcagtgaatctaggaaactggcttttggctgaggggt |
1751565 |
T |
|
| Q |
108 |
ggatgaaaccttctctctttgaaggaattgtcaacaaagatctcttggtatcactccctcaattttattcataacctcctaatattaagaagttcaaatt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1751564 |
ggatgaaaccttctctctttgaaggaattgtcaacaaagatctcttggtatcactccctcaattttatttataacctcctaatattaagaagttcaaatt |
1751465 |
T |
|
| Q |
208 |
tccaccaaaaaatcattgtatgtatgttttgatttaggatggaactcaagtacaattcaagtcaacaaagtttcagaaatatctttgtgctgaagatgga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1751464 |
tccaccaaaaaatcattgtatgtatgttttgatttaggatggaactcaagtacaattcaagtcaacaaagtttcagaaatatctttgtgctgaagatgga |
1751365 |
T |
|
| Q |
308 |
ggaggaactgctattgtagccaaccgtggttcaccttctggttgggaaacattcaaagtaagtaatatgtaacaaaagaaatactctct-ccgttccatt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1751364 |
ggaggaactgctattgtagccaaccgtggttcaccttctggttgggaaacattcaaagtaagtaatatgtaacaaaagaaatactctctcccgttccatt |
1751265 |
T |
|
| Q |
407 |
tataaaagatat |
418 |
Q |
| |
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|||||||||||| |
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| T |
1751264 |
tataaaagatat |
1751253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 1759658 - 1759556
Alignment:
| Q |
55 |
aaatccgccatacaaagcagtgaatctaggaaactggcttttggctgaggggtggatgaaaccttctctctttgaaggaattgtcaacaaagatctcttg |
154 |
Q |
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|||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1759658 |
aaatccaccatacaaagctgtgaatctaggaaactggctcttggctgaggggtggatgaaaccttctctctttgaaggaattgtcaacaaagatctattg |
1759559 |
T |
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| Q |
155 |
gta |
157 |
Q |
| |
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||| |
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| T |
1759558 |
gta |
1759556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 1742627 - 1742507
Alignment:
| Q |
240 |
tttaggatggaactcaagtacaattcaagtcaacaaagtttcagaaatatctttgtgctgaagatggaggaggaactgctattgtagccaaccgtggttc |
339 |
Q |
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||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||| |||||| |||| ||||||||| | ||||||||| ||||| |||| |
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| T |
1742627 |
tttaggatggaactcaagtacaattcatgtcaagaaagttccagacatatctttgcgctgaaaatgggggaggaactaccattgtagccgaccgtagttc |
1742528 |
T |
|
| Q |
340 |
accttctggttgggaaacatt |
360 |
Q |
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||||||||||||||||||||| |
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| T |
1742527 |
accttctggttgggaaacatt |
1742507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 240 - 362
Target Start/End: Complemental strand, 1720030 - 1719908
Alignment:
| Q |
240 |
tttaggatggaactcaagtacaattcaagtcaacaaagtttcagaaatatctttgtgctgaagatggaggaggaactgctattgtagccaaccgtggttc |
339 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| |||||| |||| |||||||| || |||||||| ||||||||| |||||||||| ||||||||||| |
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| T |
1720030 |
tttaggatggaacacaagtacaattcatgtcaagaaagttccagacatatctttccgccgaagatgggggaggaactactattgtagctaaccgtggttc |
1719931 |
T |
|
| Q |
340 |
accttctggttgggaaacattca |
362 |
Q |
| |
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||||||||||||||||||||| |
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| T |
1719930 |
tgcttctggttgggaaacattca |
1719908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 1722199 - 1722099
Alignment:
| Q |
65 |
tacaaagcagtgaatctaggaaactggcttttggctgaggggtggatgaaaccttctctctttgaaggaattgtcaacaaagatctcttggtatcactcc |
164 |
Q |
| |
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|||||||| |||||||| |||||||||||| | ||||| || |||||| |||| |||| |||||| |||||||||||||||||||||||||||||| ||| |
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| T |
1722199 |
tacaaagctgtgaatcttggaaactggcttgttgctgaaggatggatggaaccatctcgctttgacggaattgtcaacaaagatctcttggtatcattcc |
1722100 |
T |
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| Q |
165 |
c |
165 |
Q |
| |
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| |
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| T |
1722099 |
c |
1722099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 1744308 - 1744215
Alignment:
| Q |
65 |
tacaaagcagtgaatctaggaaactggcttttggctgaggggtggatgaaaccttctctctttgaaggaattgtcaacaaagatctcttggtat |
158 |
Q |
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|||||||| |||||| |||||||||||||| | ||||| || |||||| |||| |||| |||||| |||||||||||||||||||||||||||| |
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| T |
1744308 |
tacaaagctgtgaatttaggaaactggcttgttgctgaaggatggatggaaccatctcgctttgacggaattgtcaacaaagatctcttggtat |
1744215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 361
Target Start/End: Complemental strand, 1758336 - 1758217
Alignment:
| Q |
242 |
taggatggaactcaagtacaattcaagtcaacaaagtttcagaaatatctttgtgctgaagatggaggaggaactgctattgtagccaaccgtggttcac |
341 |
Q |
| |
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||||||||||||||||||||| | | ||| ||||||||||| ||||||||| ||||| |||| |||||| | | ||||||||||||||||| ||| |
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| T |
1758336 |
taggatggaactcaagtacaacttatgtccacaaagtttcaaaaatatcttgcagctgataatgggggaggagcaggtattgtagccaaccgtgactcag |
1758237 |
T |
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| Q |
342 |
cttctggttgggaaacattc |
361 |
Q |
| |
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|||||||||||||||||||| |
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| T |
1758236 |
cttctggttgggaaacattc |
1758217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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