View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11771_low_8 (Length: 430)
Name: NF11771_low_8
Description: NF11771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11771_low_8 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 430
Target Start/End: Complemental strand, 21610802 - 21610381
Alignment:
| Q |
8 |
cacagaacaacaaattcatcatcataaaaattcttctcaaataagagtgacacataaaaataagagtgccacataaaaatgactaaatcgttgtaaacaa |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21610802 |
cacaaaacaacaaattcatcatcataaaaattcttctcaaataagagtgacacataaaa-taagagtgccacataaaaatgactaaatcgttgtaaacaa |
21610704 |
T |
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| Q |
108 |
aaagtttagtttttgctttgattcaaatcacaaatttatgatttaaatcatccttcatccggatcatttgatgatttggagccatgaaatttgtgattca |
207 |
Q |
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| T |
21610703 |
aaagtttagtttttgctttgattcaaatcacaaatttatgatttaaatcatccttcatccggatcatttgatgatttggagccatgaaatttgtgattca |
21610604 |
T |
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| Q |
208 |
aatcattctttaaacgagcccatannnnnnnnaccacatgattcaaatcactaaatgaatgaattgaatcatataagggtttttaacaaatttttagctt |
307 |
Q |
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| T |
21610603 |
aatcattcttcaaacgaacccatattttttttaacacatgattcaaatcactaaatgagtgaattgaatcatataagggtttttaacaaatttttagctt |
21610504 |
T |
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| Q |
308 |
tcttttgttctaaaccttcccaacaataaatatatattttaccaccctttttctaatttactaaaacagttattctcacgctctcaaaataatcactaat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
21610503 |
tcttttgttctaaaccttcccaacaataaatatatattttaccaccctttttctaatttactaaaacagttattctcacgctctcaaaattatcactagt |
21610404 |
T |
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| Q |
408 |
ttcaaactcttgtctaaacactt |
430 |
Q |
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||||||||||||||||||||||| |
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| T |
21610403 |
ttcaaactcttgtctaaacactt |
21610381 |
T |
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