View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11771_low_9 (Length: 364)

Name: NF11771_low_9
Description: NF11771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11771_low_9
NF11771_low_9
[»] chr5 (3 HSPs)
chr5 (20-357)||(3233719-3234056)
chr5 (189-319)||(3228538-3228675)
chr5 (75-127)||(3228758-3228810)
[»] chr7 (6 HSPs)
chr7 (76-148)||(22011162-22011234)
chr7 (82-148)||(18322694-18322760)
chr7 (75-145)||(22028928-22028998)
chr7 (76-148)||(22021694-22021766)
chr7 (75-118)||(16839096-16839139)
chr7 (198-251)||(21159853-21159906)
[»] chr2 (1 HSPs)
chr2 (159-246)||(32989165-32989250)
[»] chr3 (1 HSPs)
chr3 (75-115)||(3866199-3866239)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 3234056 - 3233719
Alignment:
Q  20 tatgtgttttgatggattgcctctgcttttcccacgttgtcaagaaaacccaattgatttatttgaatttctgttaattcttgtatgttgtgtgattatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3234056 tatgtgttttgatggattgcctctgcttttcccacgttgtcaagaaaacccaattgatttatttgaatttctgttaattcttgtatgttgtgtgattatt 3233957  T
Q  120 ttctatgatggattttatatgattattttctatgagatgccttttataaaggacaaaactgtatgatgagcttacactcaaaacagacattacctcaaaa 219  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3233956 ttctatgatggattttatatgattattttctatgagatgtcttttataaaggacaaaactgtatgatgagcttacactcaaaacggacattacctcaaaa 3233857  T
Q  220 cacggtgtgccgtacttgagggtggaagagaatagtttaactagttcgtgcatgtctacactgatttgttgagcaagaatcgttttaatttatttttatt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3233856 cacggtgtgccgtacttgagggtggaagagaatagtttaactagttcgtgcatgtctacactgatttgttgagcaagaatcgttttaatttatttttatt 3233757  T
Q  320 cttgttagttaaaatttgccatctctatgtgttctgtg 357  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  3233756 cttgttagttaaaatttgccatctctatgtgttttgtg 3233719  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 189 - 319
Target Start/End: Complemental strand, 3228675 - 3228538
Alignment:
Q  189 gcttacactcaaaacagacattacctcaaaacacggtgtgccgtacttgagggtggaag-------agaatagtttaactagttcgtgcatgtctacact 281  Q
    |||||||| |||||  |||  |||||||||||||||||  ||||||||||||||||||        | |||||||||| ||||| |||||| ||||| ||    
T  3228675 gcttacacccaaaatggaccatacctcaaaacacggtgcaccgtacttgagggtggaaagtggaaaaaaatagtttaaatagtttgtgcatttctactct 3228576  T
Q  282 gatttgttgagcaagaatcgttttaatttatttttatt 319  Q
    ||||||  |||  |||||||||||||||||||||||||    
T  3228575 gatttgacgagtgagaatcgttttaatttatttttatt 3228538  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 3228810 - 3228758
Alignment:
Q  75 gatttatttgaatttctgttaattcttgtatgttgtgtgattattttctatga 127  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  3228810 gatttatttgaatttccgttaattcttgtatactgtgtgattattttctatga 3228758  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 22011162 - 22011234
Alignment:
Q  76 atttatttgaatttctgttaattcttgtatgttgtgtgattattttctatgatggattttatatgattatttt 148  Q
    |||||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||    
T  22011162 atttattttaatttctgttaattcttgtatgttatgttattattttctatgatgaattttatatgattatttt 22011234  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 18322694 - 18322760
Alignment:
Q  82 ttgaatttctgttaattcttgtatgttgtgtgattattttctatgatggattttatatgattatttt 148  Q
    |||||||||||||||||||| |||||||| ||||||| || ||||||||||||||| | ||||||||    
T  18322694 ttgaatttctgttaattcttatatgttgtttgattatgttatatgatggattttattttattatttt 18322760  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 22028928 - 22028998
Alignment:
Q  75 gatttatttgaatttctgttaattcttgtatgttgtgtgattattttctatgatggattttatatgattat 145  Q
    |||||||||||||||||||| ||||||  ||||||||||| ||||||||||| ||| |||||| |||||||    
T  22028928 gatttatttgaatttctgtttattcttccatgttgtgtgactattttctatggtggcttttatttgattat 22028998  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 22021694 - 22021766
Alignment:
Q  76 atttatttgaatttctgttaattcttgtatgttgtgtgattattttctatgatggattttatatgattatttt 148  Q
    |||||||| | |||||||||||||||| ||||| ||||| |||||| |||||| | ||||| |||||||||||    
T  22021694 atttattttattttctgttaattcttgaatgttatgtgactattttatatgatagcttttacatgattatttt 22021766  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 16839139 - 16839096
Alignment:
Q  75 gatttatttgaatttctgttaattcttgtatgttgtgtgattat 118  Q
    |||||||||||||||| ||||||||||||||||||| |||||||    
T  16839139 gatttatttgaatttccgttaattcttgtatgttgtttgattat 16839096  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 21159906 - 21159853
Alignment:
Q  198 caaaacagacattacctcaaaacacggtgtgccgtacttgagggtggaagagaa 251  Q
    |||| |||||| ||||||||||||||||||| | ||||||||||||||| ||||    
T  21159906 caaagcagacaatacctcaaaacacggtgtgacatacttgagggtggaacagaa 21159853  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 32989250 - 32989165
Alignment:
Q  159 ccttttataaaggacaaaactgtatgatgagcttacactcaaaacagacattacctcaaaacacggtgtgccgtacttgagggtggaa 246  Q
    |||||||||||||||||||||||  || | || |||||||||| ||||||   ||||||||  |||||||  ||||||||||||||||    
T  32989250 ccttttataaaggacaaaactgt--gaagggcatacactcaaagcagacaaggcctcaaaatgcggtgtgatgtacttgagggtggaa 32989165  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 3866199 - 3866239
Alignment:
Q  75 gatttatttgaatttctgttaattcttgtatgttgtgtgat 115  Q
    |||||||||||||||  ||||||||||||||||||| ||||    
T  3866199 gatttatttgaattttcgttaattcttgtatgttgtttgat 3866239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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