View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11772_low_1 (Length: 502)

Name: NF11772_low_1
Description: NF11772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11772_low_1
NF11772_low_1
[»] chr3 (4 HSPs)
chr3 (189-487)||(39712278-39712579)
chr3 (205-487)||(11527907-11528190)
chr3 (10-147)||(39712099-39712236)
chr3 (9-143)||(11527720-11527854)
[»] chr2 (8 HSPs)
chr2 (193-416)||(28166196-28166425)
chr2 (193-416)||(44905040-44905270)
chr2 (189-364)||(37952800-37952975)
chr2 (198-342)||(37958560-37958704)
chr2 (198-342)||(37896498-37896642)
chr2 (44-143)||(37953012-37953111)
chr2 (82-130)||(37896385-37896433)
chr2 (79-130)||(37958769-37958820)
[»] chr1 (2 HSPs)
chr1 (193-416)||(40768147-40768376)
chr1 (193-417)||(13228561-13228791)
[»] chr7 (1 HSPs)
chr7 (193-416)||(38757177-38757406)
[»] chr4 (2 HSPs)
chr4 (205-416)||(11149307-11149524)
chr4 (193-416)||(34538660-34538888)
[»] chr5 (1 HSPs)
chr5 (193-345)||(6535356-6535513)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 189 - 487
Target Start/End: Original strand, 39712278 - 39712579
Alignment:
Q  189 atgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcatta---tcatttttcttc 285  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||    
T  39712278 atgcattgcttcaaccatactagcccaaacaaaagcagaagttacaacaaatttagatataaattttggcacgttgatttcattattatcatttttcttc 39712377  T
Q  286 cattgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttgacttt 385  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712378 cattgattcagcacccattttttcatcccctcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttgacttt 39712477  T
Q  386 gagcaatgagtctaaacttccatgattttcttgtnnnnnnntaatctcttaaaataagatcctcaagtcctctagggtccttcaaaacttctctatcaaa 485  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712478 gagcaatgagtctaaacttccatgattttcttgtaaaaaaataatctcttaaaataagatcctcaagtcctctagggtccttcaaaacttctctatcaaa 39712577  T
Q  486 ac 487  Q
    ||    
T  39712578 ac 39712579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 205 - 487
Target Start/End: Original strand, 11527907 - 11528190
Alignment:
Q  205 atactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatcatttttcttccattgattcagcaccca-t 303  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||  | |    
T  11527907 atactagcccaaacgaaagcacaagttacaacaaatttagatagaaattgtggcgcgttgatttcgttatcatttttcttccattgattcagcacatatt 11528006  T
Q  304 tttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttgactttgagcaatgagtctaaact 403  Q
    ||||||||||  ||||||||||||||||||||| |||||||| |||||| | |||||| ||||||| |  |||||||||||| |||||||||||||  ||    
T  11528007 tttttcatcctctcaatttcttcttttccaaaaacaataattgccttaacaaaatcttgatgttcttccttgctttgactttcagcaatgagtctatgct 11528106  T
Q  404 tccatgattttcttgtnnnnnnntaatctcttaaaataagatcctcaagtcctctagggtccttcaaaacttctctatcaaaac 487  Q
    |||||||||||||  |       || || ||||| | || ||||||||||||||| |||||| ||||||||||||| |||||||    
T  11528107 tccatgattttctcattacaaaatagtcccttaagaaaacatcctcaagtcctcttgggtccctcaaaacttctctgtcaaaac 11528190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 39712099 - 39712236
Alignment:
Q  10 acatcaacaaaactatttattcccttcatatcctttctcttcatggttgcacttttagacactacacagttcccaaaatacccctctggtattgagtacc 109  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712099 acatcaacaaaactatctattcccttcatatcctttctcttcatggttgcacttttagacactacacagttcccaaaatacccctctggtattgagtacc 39712198  T
Q  110 caagtctatctctgcaatcacatgtgaaacaaaagtac 147  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39712199 caagtctatctctgcaatcacatgtgaaacaaaagtac 39712236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 11527720 - 11527854
Alignment:
Q  9 gacatcaacaaaactatttattcccttcatatcctttctcttcatggttgcacttttagacactacacagttcccaaaatacccctctggtattgagtac 108  Q
    |||||||||||||||||||  ||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||  ||     
T  11527720 gacatcaacaaaactattttctcctttcatatcctttctcttcattgttgcacttttagacactaaacagttcccaaaatacccctctggtattggataa 11527819  T
Q  109 ccaagtctatctctgcaatcacatgtgaaacaaaa 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  11527820 ccaagtctatctctgcaatcacatgtgaaagaaaa 11527854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 193 - 416
Target Start/End: Original strand, 28166196 - 28166425
Alignment:
Q  193 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc------atttttcttcc 286  Q
    ||||||||||| ||||||| |||||| |||||| ||||||| |||||||||| |||||||| ||||||||||||||| |||||      |||||||||||    
T  28166196 attgctttaactatactagaccaaacgaaagcacaagttacgacaaatttagttagaaattgtggcacgttgatttctttatcgttgccatttttcttcc 28166295  T
Q  287 attgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttgactttg 386  Q
    |||||||||| ||  ||||||||||||| ||||||||||||||||||||| |||||||| | |||| | ||||||||||||||   ||| ||||| |||     
T  28166296 attgattcagtacatattttttcatcccctcaatttcttcttttccaaaaacaataattgctttaataaaatcttcatgttctttggtggtttgagtttc 28166395  T
Q  387 agcaatgagtctaaacttccatgattttct 416  Q
    |||||||||||||  |||||||||||||||    
T  28166396 agcaatgagtctaggcttccatgattttct 28166425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 193 - 416
Target Start/End: Original strand, 44905040 - 44905270
Alignment:
Q  193 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc------atttttcttcc 286  Q
    ||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||| |||| |||||||||| |||||      |||||||||||    
T  44905040 attgctttaactatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttccttatcgttgccatttttcttcc 44905139  T
Q  287 attgattcagcaccca-ttttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttgacttt 385  Q
    |||||| ||  ||  | |||||||||||| ||||||||||||||||||||| |||||||| |||||| | ||| ||||||||||   ||| ||||| |||    
T  44905140 attgatccattacatatttttttcatcccctcaatttcttcttttccaaaaacaataattgccttaacaaaatgttcatgttctttggtgatttgagttt 44905239  T
Q  386 gagcaatgagtctaaacttccatgattttct 416  Q
     |||||||||||||  |||||||||||||||    
T  44905240 cagcaatgagtctaggcttccatgattttct 44905270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 189 - 364
Target Start/End: Complemental strand, 37952975 - 37952800
Alignment:
Q  189 atgcattgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatcatttttcttccat 288  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||| |||  | | |||||| | ||| ||||||||||||    
T  37952975 atgcattgctttaaccaaactaacccaaacaaaagcacaagttacaacatatttagatagaaattgtggtgcttggatttcttgatcttttttcttccat 37952876  T
Q  289 tgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcat 364  Q
    | |||||  ||||||||||||||||| || |||||||||||||| ||| |||||||| |||||| | |||||||||    
T  37952875 tcattcaatacccattttttcatcccctcgatttcttcttttccgaaaacaataattgccttaacacaatcttcat 37952800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 342
Target Start/End: Complemental strand, 37958704 - 37958560
Alignment:
Q  198 tttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatcatttttcttccattgattcagc 297  Q
    ||||||||||||||||||||  ||| || ||||||||||||||||||||| ||||| |||| | |  | ||||  ||||||||||||||||||||  ||     
T  37958704 tttaaccatactagcccaaatgaaaccacaagttacaacaaatttagataaaaattgtggcgcttgaacttcacaatcatttttcttccattgatcaagt 37958605  T
Q  298 acccattttttcatcccttcaatttcttcttttccaaaagcaata 342  Q
     ||||| ||||||| |  ||||||||||||||| ||||| |||||    
T  37958604 gcccatattttcattctctcaatttcttcttttgcaaaaacaata 37958560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 342
Target Start/End: Original strand, 37896498 - 37896642
Alignment:
Q  198 tttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatcatttttcttccattgattcagc 297  Q
    |||||||| ||||| |||||  ||| || |||||||||||||||||||||  |||| |||| | |  | ||||| ||||||||||||||||||||| ||     
T  37896498 tttaaccaaactagaccaaatgaaaccacaagttacaacaaatttagataacaattgtggcgcttgaacttcatgatcatttttcttccattgattaagt 37896597  T
Q  298 acccattttttcatcccttcaatttcttcttttccaaaagcaata 342  Q
     ||||| ||||||| |  |||||||| |||||| ||||| |||||    
T  37896598 gcccatattttcattctctcaatttcctcttttgcaaaaacaata 37896642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 37953111 - 37953012
Alignment:
Q  44 ttctcttcatggttgcacttttagacactacacagttcccaaaatacccctctggtattgagtacccaagtctatctctgcaatcacatgtgaaacaaaa 143  Q
    |||||||||| ||||||   ||| || ||| |||||| || ||||||||||| ||||||| |||||| ||||| ||||||||||||| ||||||||||||    
T  37953111 ttctcttcatcgttgcatgattaaacgctaaacagtttccgaaatacccctccggtattgtgtaccctagtctgtctctgcaatcacctgtgaaacaaaa 37953012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 37896385 - 37896433
Alignment:
Q  82 ccaaaatacccctctggtattgagtacccaagtctatctctgcaatcac 130  Q
    |||||||||||||||||||||  |||||||||||||||||| |||||||    
T  37896385 ccaaaatacccctctggtattttgtacccaagtctatctctacaatcac 37896433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 37958820 - 37958769
Alignment:
Q  79 ttcccaaaatacccctctggtattgagtacccaagtctatctctgcaatcac 130  Q
    ||||||||||||||||||||||||  |||||||||||| ||||| |||||||    
T  37958820 ttcccaaaatacccctctggtattttgtacccaagtctttctctacaatcac 37958769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 193 - 416
Target Start/End: Original strand, 40768147 - 40768376
Alignment:
Q  193 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc------atttttcttcc 286  Q
    ||||||||||| |||||||||||||| ||| || ||||||| ||||||||||||||||||| ||||||||||||||| |||||      |||||||||||    
T  40768147 attgctttaactatactagcccaaacgaaatcacaagttacgacaaatttagatagaaattgtggcacgttgatttccttatcgttgccatttttcttcc 40768246  T
Q  287 attgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttgactttg 386  Q
    |||||||||| ||  ||||||||||||| ||||||||||||||||||||| |||||||| |||||| | ||||||||||||||   ||| ||||| |||     
T  40768247 attgattcagtacatattttttcatcccctcaatttcttcttttccaaaaacaataattgccttaacaaaatcttcatgttctttggtgatttgagtttc 40768346  T
Q  387 agcaatgagtctaaacttccatgattttct 416  Q
    | |||||||||||  ||||||| |||||||    
T  40768347 aacaatgagtctaggcttccataattttct 40768376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 193 - 417
Target Start/End: Complemental strand, 13228791 - 13228561
Alignment:
Q  193 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc------atttttcttcc 286  Q
    ||||||||||  |||||||||||||| |||||| ||||||| ||||||||||||||||||| |||| |||||||||| |||||      |||||||||||    
T  13228791 attgctttaaatatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgtggcgcgttgatttccttatcgttgccatttttcttcc 13228692  T
Q  287 attgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttgactttg 386  Q
    |||||||||| ||  ||||||||||||| |||||||||||||||| |||| ||||||||  ||||| | ||||||||||||||   ||| ||||| |||     
T  13228691 attgattcagtacatattttttcatcccctcaatttcttcttttctaaaaacaataattgtcttaacaaaatcttcatgttctttggtgatttgagtttc 13228592  T
Q  387 agcaatgagtctaaacttccatgattttctt 417  Q
    |||||||||||||  ||||||||||||||||    
T  13228591 agcaatgagtctaggcttccatgattttctt 13228561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 193 - 416
Target Start/End: Original strand, 38757177 - 38757406
Alignment:
Q  193 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatc------atttttcttcc 286  Q
    ||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||| | || |||||||||| |||||      |||||||||||    
T  38757177 attgctttaactatactagcccaaacgaaagcacaagttacgacaaatttagatagaaattgttgcgcgttgatttccttatcgttgccatttttcttcc 38757276  T
Q  287 attgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttgactttg 386  Q
    ||||||||||  |  ||||||||||||| ||||||||||||||| ||||| ||||||||   |||| | ||||||||||||||   ||| ||||| |||     
T  38757277 attgattcagtgcatattttttcatcccctcaatttcttctttttcaaaaacaataattgttttaacaaaatcttcatgttctttggtgatttgagtttc 38757376  T
Q  387 agcaatgagtctaaacttccatgattttct 416  Q
    |||||||||||||  |||||||||||||||    
T  38757377 agcaatgagtctaggcttccatgattttct 38757406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 205 - 416
Target Start/End: Complemental strand, 11149524 - 11149307
Alignment:
Q  205 atactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattat------catttttcttccattgattcagca 298  Q
    |||||| ||||| | |||||| ||||||| ||||| | ||||||||||| ||||||||||||||| ||||      ||||||||||||||||||||||||    
T  11149524 atactaacccaagcgaaagcacaagttacgacaaaatgagatagaaattgtggcacgttgatttccttattgttgccatttttcttccattgattcagca 11149425  T
Q  299 cccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttgactttgagcaatgagtct 398  Q
    |  ||||||||||||| ||||||||||||||||||||| |||||||| |||||| | ||||||||||||||   ||| ||| | ||| ||||||||||||    
T  11149424 catattttttcatcccctcaatttcttcttttccaaaaacaataattgccttaacaaaatcttcatgttctttggtgatttcagtttcagcaatgagtct 11149325  T
Q  399 aaacttccatgattttct 416  Q
    |  |||||||||||||||    
T  11149324 attcttccatgattttct 11149307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 193 - 416
Target Start/End: Original strand, 34538660 - 34538888
Alignment:
Q  193 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattatcatt-----tttcttcca 287  Q
    ||||||||||| |||||||||||||| |||||| ||||||  ||||||||| ||||||||| |||| |||||||||| ||||| ||     ||| || ||    
T  34538660 attgctttaactatactagcccaaacgaaagcataagttatgacaaatttacatagaaattgtggcgcgttgatttccttatcgttgccattttttttca 34538759  T
Q  288 ttgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataattaccttaaaagaatcttcatgttctccagtgctttgactttga 387  Q
    |||||| || ||  ||||||||||||| ||||||||||||||||||||| |||||||| |||||| | ||||||||||||||   ||| ||||| ||| |    
T  34538760 ttgattaagtacatattttttcatcccctcaatttcttcttttccaaaaacaataattgccttaacaaaatcttcatgttctttggtgatttgagtttca 34538859  T
Q  388 gcaatgagtctaaacttccatgattttct 416  Q
    | ||||||||||  |||||||||||||||    
T  34538860 gtaatgagtctaggcttccatgattttct 34538888  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 193 - 345
Target Start/End: Original strand, 6535356 - 6535513
Alignment:
Q  193 attgctttaaccatactagcccaaacaaaagcagaagttacaacaaatttagatagaaattttggcacgttgatttcattat------catttttcttcc 286  Q
    ||||||||||| |||||||| ||||| |||||| || ||||  |||||||||||||||||| |||| |||||||||  ||||      ||||||||||||    
T  6535356 attgctttaactatactagctcaaacgaaagcacaaattacggcaaatttagatagaaattgtggcgcgttgattttcttattgttgccatttttcttcc 6535455  T
Q  287 attgattcagcacccattttttcatcccttcaatttcttcttttccaaaagcaataatt 345  Q
    ||||||| || ||  |||||||||||||  |||||||||||||||||||| ||||||||    
T  6535456 attgattaagtacatattttttcatccc-ccaatttcttcttttccaaaaacaataatt 6535513  T

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