View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11773_high_10 (Length: 385)

Name: NF11773_high_10
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11773_high_10
NF11773_high_10
[»] chr5 (1 HSPs)
chr5 (14-385)||(10341027-10341397)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 385
Target Start/End: Original strand, 10341027 - 10341397
Alignment:
Q  14 atgaagaagtgaagaagcaaagtatgatgattatatgataaaagtcactttaagagttatattccatatataaaggaacataattatatcacccttgaca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10341027 atgaagaagtgaagaagcaaagtatgatgattatatgataaaagtcactttaagagttatattccatatataaaggaacataattatatcacccttgaca 10341126  T
Q  114 tttgtcattttcattagatgttaggtatttagtcatataagcaacnnnnnnnggagtgatggtggttacaaagagttgtttctttcaatgattgagggtt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10341127 tttgtcattttcattagatgttaggtatttagtcatataagcaacaaaaaaaggagtgatggtggttacaaagagttgtttctttcaatgattgagggtt 10341226  T
Q  214 tcatgatggttttaataaatcaacaaagctaaggaagtagttccggtatggtccaaaagggtgaccaaccctgcaccacttgggtgggccagattttcgg 313  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||| || |    
T  10341227 tcatgatgg-tttaataaatcaacaaagctaaggaagtagttctggtatagtccaaaagggtgaccaaacctgcaccaattgggtgggccagattgtctg 10341325  T
Q  314 agatcccctttgagattgagttgagcttatggtgtcgtcctcgtctcgaaaagttcattccctaaacgcaca 385  Q
    |||||| ||||||||||||||||||||||||||||||||   |||||||| || |||||| |||||||||||    
T  10341326 agatccactttgagattgagttgagcttatggtgtcgtcggagtctcgaatagatcattcactaaacgcaca 10341397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University