View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11773_high_18 (Length: 225)
Name: NF11773_high_18
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11773_high_18 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 9062232 - 9062354
Alignment:
| Q |
17 |
gcactcatttttatctctcattttgaattgcaagtctgaggtcacacttatccctcttctgtaaaactctcatattatggtgtgtgaagaatttgatgat |
116 |
Q |
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|||| ||||||||||||||||||||| ||| ||||||||| ||||||||||| ||| ||||||| ||||| |||| | ||||||||||||||||||| |
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| T |
9062232 |
gcacccatttttatctctcattttgagttgtaagtctgagatcacacttatc---cttgtgtaaaaatctcacattaag--gtgtgaagaatttgatgat |
9062326 |
T |
|
| Q |
117 |
gaatccttctctctccctctggcctttctaa |
147 |
Q |
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| T |
9062327 |
gaatc---ctctctccctctggcctatctaa |
9062354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 9297626 - 9297521
Alignment:
| Q |
37 |
ttttgaattgcaagtctgaggtcacacttatccctcttctgtaaaactctcatattatggtgtgtgaagaatttgatgatgaatccttctctctccctct |
136 |
Q |
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|||||||||| | ||||||| ||||| ||||||||||| ||||||| ||||| |||| | |||||||||||||||||| ||||| |||||||||||| |
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| T |
9297626 |
ttttgaattgtatgtctgagatcacagttatccctcttgtgtaaaaatctcacatta--gagtgtgaagaatttgatgaggaatc---ctctctccctct |
9297532 |
T |
|
| Q |
137 |
ggcctttctaa |
147 |
Q |
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||||||||||| |
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| T |
9297531 |
ggcctttctaa |
9297521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 9315200 - 9315076
Alignment:
| Q |
17 |
gcactcatttttatctctcattttgaattgcaagtctgaggtcacacttatccctcttctgtaaaactctcatattatggtgtgtgaagaatttgatgat |
116 |
Q |
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|||||||||||| |||||| | ||| |||| | ||||||| ||||||||||||||||| ||||||| | | | |||| ||| | | ||||||||||||| |
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| T |
9315200 |
gcactcattttt-tctctcttcttggattgtatgtctgagatcacacttatccctcttttgtaaaaatatgacattagggtattt--agaatttgatgat |
9315104 |
T |
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| Q |
117 |
gaatccttctctctccctctggcctttctaa |
147 |
Q |
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| T |
9315103 |
gaatcct---ctctccctctggcctttctaa |
9315076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 9291078 - 9290966
Alignment:
| Q |
30 |
tctctcattttgaattgcaagtctgaggtcacacttatccctcttctgtaaaactctcatattatggtgtgtgaagaatttgatgatgaatccttctctc |
129 |
Q |
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|||||| |||||||||| | ||||||| ||||||||||||||||| ||||||| ||| | |||| ||| ||| |||||||||||||||| | ||||| |
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| T |
9291078 |
tctctctttttgaattgtatgtctgagatcacacttatccctcttgtgtaaaaatctgacattagggtatgt--agaatttgatgatgaacc---ctctc |
9290984 |
T |
|
| Q |
130 |
tccctctggcctttctaa |
147 |
Q |
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| T |
9290983 |
tccctctgacctatctaa |
9290966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 9297426 - 9297386
Alignment:
| Q |
168 |
tacttgctacttctgcaattaaattcaaagatctcagtctc |
208 |
Q |
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| T |
9297426 |
tacttgctacttctgcaattaaattcaaagatctcactctc |
9297386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 7117072 - 7117187
Alignment:
| Q |
22 |
catttttatctctcattttgaattgcaagtctgaggtcacacttatccctcttctgtaaaactctcatattatggtgtgtgaagaatttgatgatgaatc |
121 |
Q |
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||||||||||||||||||||||||| || ||| ||||| ||||||| | | ||||||| ||||| |||| | |||| ||||||||||||||||||| |
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| T |
7117072 |
catttttatctctcattttgaattg----tccgagatcacatttatcccacct-tgtaaaaatctcacattaggatgtg--aagaatttgatgatgaatc |
7117164 |
T |
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| Q |
122 |
cttctctctccctctggcctttctaa |
147 |
Q |
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| T |
7117165 |
---ctctctccctctggcctctctaa |
7117187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 9285289 - 9285337
Alignment:
| Q |
96 |
gtgtgtgaagaatttgatgatgaatccttctctctccctctggcctttctaa |
147 |
Q |
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| T |
9285289 |
gtgtgtgaagaatttgattatgaatc---ctctctccctctggcctttctaa |
9285337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 9326320 - 9326275
Alignment:
| Q |
165 |
ctctacttgctactt-ctgcaattaaattcaaagatctcagtctct |
209 |
Q |
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| T |
9326320 |
ctctacttgctactttctgcaattaaattcaaagatctcactctct |
9326275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 9285240 - 9285285
Alignment:
| Q |
17 |
gcactcatttttatctctcattttgaattgcaagtctgaggtcaca |
62 |
Q |
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|||| ||||||||| ||||||||||||||| ||||||||| ||||| |
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| T |
9285240 |
gcacacatttttatatctcattttgaattgtaagtctgagatcaca |
9285285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 9318678 - 9318621
Alignment:
| Q |
17 |
gcactcatttttatctctcattttgaattgcaagtctgaggtcacacttatccctctt |
74 |
Q |
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|||| |||||||| ||||||||||||||| | ||||||| ||||| ||||||||||| |
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| T |
9318678 |
gcacccatttttacatctcattttgaattgtatgtctgagatcacatttatccctctt |
9318621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 1525 - 1479
Alignment:
| Q |
147 |
atatttataattttaactctctacttgctacttctgcaattaaattc |
193 |
Q |
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| T |
1525 |
atatttgtaattgaaactctctacttgctacttctgcaattaaattc |
1479 |
T |
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