View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11773_high_2 (Length: 548)

Name: NF11773_high_2
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11773_high_2
NF11773_high_2
[»] chr5 (9 HSPs)
chr5 (248-418)||(26711285-26711455)
chr5 (248-418)||(26981022-26981192)
chr5 (99-240)||(26713549-26713690)
chr5 (99-240)||(26983288-26983429)
chr5 (415-515)||(26711142-26711242)
chr5 (415-515)||(26980879-26980979)
chr5 (296-351)||(39291620-39291676)
chr5 (280-318)||(26705613-26705651)
chr5 (280-318)||(26975346-26975384)
[»] chr4 (2 HSPs)
chr4 (296-344)||(13011002-13011050)
chr4 (279-351)||(20059848-20059922)
[»] chr7 (1 HSPs)
chr7 (291-351)||(5435329-5435390)
[»] chr1 (1 HSPs)
chr1 (296-351)||(3170092-3170149)
[»] chr2 (1 HSPs)
chr2 (296-344)||(21188976-21189025)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 248 - 418
Target Start/End: Complemental strand, 26711455 - 26711285
Alignment:
Q  248 tttaggttatttgattgatagagggcaacaatttgttgtattgttgagttattaaatatttcaaaagttttcttattgctaaaaaacaatttaaatttga 347  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||    
T  26711455 tttaggttatttgattgatagagggcaacaatttgttgtatttttgagttattaaatatttcaaaagttttcttattactataaaacaatttaaattaga 26711356  T
Q  348 attagcgatgctattcatcgcgaataaaatcctcgcggggcactcacaaagactgattcctagttataatg 418  Q
    |||||||||||||||||||||||||||||| ||| || ||||||||| |||| ||||||||||||||||||    
T  26711355 attagcgatgctattcatcgcgaataaaattctcacgaggcactcacgaagagtgattcctagttataatg 26711285  T

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Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 248 - 418
Target Start/End: Complemental strand, 26981192 - 26981022
Alignment:
Q  248 tttaggttatttgattgatagagggcaacaatttgttgtattgttgagttattaaatatttcaaaagttttcttattgctaaaaaacaatttaaatttga 347  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||    
T  26981192 tttaggttatttgattgatagagggcaacaatttgttgtatttttgagttattaaatatttcaaaagttttcttattactataaaacaatttaaattaga 26981093  T
Q  348 attagcgatgctattcatcgcgaataaaatcctcgcggggcactcacaaagactgattcctagttataatg 418  Q
    |||||||||||||||||||||||||||||| ||| || ||||||||| |||| ||||||||||||||||||    
T  26981092 attagcgatgctattcatcgcgaataaaattctcacgaggcactcacgaagagtgattcctagttataatg 26981022  T

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Target: chr5; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 26713690 - 26713549
Alignment:
Q  99 taactaccgcaataataagtgtgaaaattttaagaaagagcaatacctataaacccgtgtgggggaaccctcgccgccgctggctgacgttgattccatg 198  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26713690 taactaccgcaataataagtgtgaaaattttaagacagagcaagacctataaacccgtgtgggggaaccctcgccgccgctggctgacgttgattccatg 26713591  T
Q  199 gcaggctgccacgccactccgtcgcttcaatgtaacaatatt 240  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  26713590 gcaggctgccactccactccgtcgcttcaatgtaacaatatt 26713549  T

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Target: chr5; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 26983429 - 26983288
Alignment:
Q  99 taactaccgcaataataagtgtgaaaattttaagaaagagcaatacctataaacccgtgtgggggaaccctcgccgccgctggctgacgttgattccatg 198  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26983429 taactaccgcaataataagtgtgaaaattttaagacagagcaagacctataaacccgtgtgggggaaccctcgccgccgctggctgacgttgattccatg 26983330  T
Q  199 gcaggctgccacgccactccgtcgcttcaatgtaacaatatt 240  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  26983329 gcaggctgccactccactccgtcgcttcaatgtaacaatatt 26983288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 415 - 515
Target Start/End: Complemental strand, 26711242 - 26711142
Alignment:
Q  415 aatggtgttatgcggtacaaacatatatataaatggggataaattcgggaagtttaattcgctttacatagcatttttcaattagaattattactttatt 514  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  26711242 aatggtgtcatgcggtacaaacatatatataaatggggataaattcgggaagtttaattcgctttacataacatttttcaattaaaattattactttatt 26711143  T
Q  515 t 515  Q
    |    
T  26711142 t 26711142  T

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Target: chr5; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 415 - 515
Target Start/End: Complemental strand, 26980979 - 26980879
Alignment:
Q  415 aatggtgttatgcggtacaaacatatatataaatggggataaattcgggaagtttaattcgctttacatagcatttttcaattagaattattactttatt 514  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  26980979 aatggtgtcatgcggtacaaacatatatataaatggggataaattcgggaagtttaattcgctttacataacatttttcaattaaaattattactttatt 26980880  T
Q  515 t 515  Q
    |    
T  26980879 t 26980879  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 39291620 - 39291676
Alignment:
Q  296 ttattaaatatttcaaaagtttt-cttattgctaaaaaacaatttaaatttgaatta 351  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||    
T  39291620 ttattaaatatttcaaaagtttttcttattactagaaaacaatttaaattagaatta 39291676  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 26705651 - 26705613
Alignment:
Q  280 ttgttgtattgttgagttattaaatatttcaaaagtttt 318  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  26705651 ttgttgtatttttgagttattaaatatttcaaaagtttt 26705613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 26975384 - 26975346
Alignment:
Q  280 ttgttgtattgttgagttattaaatatttcaaaagtttt 318  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  26975384 ttgttgtatttttgagttattaaatatttcaaaagtttt 26975346  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 13011050 - 13011002
Alignment:
Q  296 ttattaaatatttcaaaagttttcttattgctaaaaaacaatttaaatt 344  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  13011050 ttattaaatatttcaaaagttttcttattactagaaaacaatttaaatt 13011002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 351
Target Start/End: Complemental strand, 20059922 - 20059848
Alignment:
Q  279 tttgttgtattgttgagttattaaatatttcaaaag-ttttcttattgct-aaaaaacaatttaaatttgaatta 351  Q
    ||||||| ||| |||  ||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||||    
T  20059922 tttgttgaatttttgtcttattaaatatttcaaaagtttttcttattcctaaaaaaacaatttaaattagaatta 20059848  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 5435390 - 5435329
Alignment:
Q  291 ttgagttattaaatatttcaaaag-ttttcttattgctaaaaaacaatttaaatttgaatta 351  Q
    |||||||||||||||||||||||| ||||||| || ||| ||||||||||| ||| ||||||    
T  5435390 ttgagttattaaatatttcaaaagtttttcttttttctagaaaacaatttatattagaatta 5435329  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 3170092 - 3170149
Alignment:
Q  296 ttattaaatatttcaaaagtttt--cttattgctaaaaaacaatttaaatttgaatta 351  Q
    |||||||||||||||||||||||   ||||| ||| ||||||||||||||| ||||||    
T  3170092 ttattaaatatttcaaaagttttgagttattactataaaacaatttaaattagaatta 3170149  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 21188976 - 21189025
Alignment:
Q  296 ttattaaatatttcaaaagtttt-cttattgctaaaaaacaatttaaatt 344  Q
    ||||||||||||||||| ||||| |||||| ||| |||||||||||||||    
T  21188976 ttattaaatatttcaaacgtttttcttattactagaaaacaatttaaatt 21189025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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