View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11773_high_5 (Length: 443)
Name: NF11773_high_5
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11773_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 39676877 - 39677216
Alignment:
| Q |
1 |
tgaagggagagggaaatcagtggtttgtgaggctgtaattaaggaagaggtggtgaagaaagtgttgaagactagtgtgaagtctttggttgagcttaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
39676877 |
tgaagggagagggaaatcagtggtttgtgaggctgtaattaaggaagaggtggtgaagaaagtgttgaagactagcgtggagtctttggttgagcttaac |
39676976 |
T |
|
| Q |
101 |
atgcttaaaaatcttactggttcagccatggctggtgctcttggtggcttcaatgcacatgctagtaatattgtttcagcagtttacttggcaacaggtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39676977 |
atgcttaaaaatcttactggttcagccatggctggtgctcttggtggcttcaatgcacatgctagtaatattgtttcagcagtttacttggcaacaggtc |
39677076 |
T |
|
| Q |
201 |
aagatcctgctcaaaatgttgagagttctcattgtatgaccatgatggaagctgttaatgatggcaaggaccttcatatctcagtcactatgccttccat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39677077 |
aagatcctgctcaaaatgttgagagttctcattgtatgaccatgatggaagctgttaatgatggcaaggaccttcatatctcagtcactatgccttccat |
39677176 |
T |
|
| Q |
301 |
tgaggtatatataattacttgttttaatctttattattggtttg |
344 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39677177 |
tgagg----tataattacttgttttaatctttattattggtttg |
39677216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 10047082 - 10047390
Alignment:
| Q |
1 |
tgaagggagagggaaatcagtggtttgtgaggctgtaattaaggaagaggtggtgaagaaagtgttgaagactagtgtgaagtctttggttgagcttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
10047082 |
tgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagaggtggtgaagaaagtgttgaagattagtgtggagtctttggttgagcttaac |
10047181 |
T |
|
| Q |
101 |
atgcttaaaaatcttactggttcagccatggctggtgctcttggtggcttcaatgcacatgctagtaatattgtttcagcagtttacttggcaacaggtc |
200 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
10047182 |
atgttaaaaaatcttactggttcagccatggctggtgctcttggtggattcaatgcacatgctagtaatattgtttctgctatttacttggctacaggtc |
10047281 |
T |
|
| Q |
201 |
aagatcctgctcaaaatgttgagagttctcattgtatgaccatgatggaagctgttaatgatggcaaggaccttcatatctcagtcactatgccttccat |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||||||||||||| |
|
|
| T |
10047282 |
aagatcctgctcagaatgttgagagttctcaatgtatgaccatgatggaagctgtgaatgatggcaaagaccttcacatctctgttactatgccttccat |
10047381 |
T |
|
| Q |
301 |
tgaggtata |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
10047382 |
tgaggtata |
10047390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 10867334 - 10867639
Alignment:
| Q |
1 |
tgaagggagagggaaatcagtggtttgtgaggctgtaattaaggaagaggtggtgaagaaagtgttgaagactagtgtgaagtctttggttgagcttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
10867334 |
tgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagaggtggtgaagaaagtgctgaagactagtgtggagtctttggttgagcttaac |
10867433 |
T |
|
| Q |
101 |
atgcttaaaaatcttactggttcagccatggctggtgctcttggtggcttcaatgcacatgctagtaatattgtttcagcagtttacttggcaacaggtc |
200 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||| ||||| | |
|
|
| T |
10867434 |
atgctaaaaaaccttaccggttcagccatggctggtgctcttggcggctttaatgcacatgctagtaatattgtttctgcaatttacttggctacaggac |
10867533 |
T |
|
| Q |
201 |
aagatcctgctcaaaatgttgagagttctcattgtatgaccatgatggaagctgttaatgatggcaaggaccttcatatctcagtcactatgccttccat |
300 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10867534 |
aagatcctgctcagaatgttgaaagttctcactgtatgaccatgatggaagccgtgaatgacggaaaggaccttcatatctcagtcactatgccttccat |
10867633 |
T |
|
| Q |
301 |
tgaggt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
10867634 |
tgaggt |
10867639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 10872978 - 10872673
Alignment:
| Q |
1 |
tgaagggagagggaaatcagtggtttgtgaggctgtaattaaggaagaggtggtgaagaaagtgttgaagactagtgtgaagtctttggttgagcttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
10872978 |
tgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtgaagaaagtgctgaagactagtgtggagtctttggttgagcttaac |
10872879 |
T |
|
| Q |
101 |
atgcttaaaaatcttactggttcagccatggctggtgctcttggtggcttcaatgcacatgctagtaatattgtttcagcagtttacttggcaacaggtc |
200 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||| ||||| | |
|
|
| T |
10872878 |
atgctaaaaaaccttaccggttcagccatggctggtgctcttggcggctttaatgcacatgctagtaatattgtttctgcaatttacttggctacaggac |
10872779 |
T |
|
| Q |
201 |
aagatcctgctcaaaatgttgagagttctcattgtatgaccatgatggaagctgttaatgatggcaaggaccttcatatctcagtcactatgccttccat |
300 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10872778 |
aagatcctgctcagaatgttgaaagttctcactgtatgaccatgatggaagccgtgaatgacggaaaggaccttcatatctcagtcactatgccttccat |
10872679 |
T |
|
| Q |
301 |
tgaggt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
10872678 |
tgaggt |
10872673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 10878049 - 10877744
Alignment:
| Q |
1 |
tgaagggagagggaaatcagtggtttgtgaggctgtaattaaggaagaggtggtgaagaaagtgttgaagactagtgtgaagtctttggttgagcttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
10878049 |
tgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtgaagaaagtgctgaagactagtgtggagtctttggttgagcttaac |
10877950 |
T |
|
| Q |
101 |
atgcttaaaaatcttactggttcagccatggctggtgctcttggtggcttcaatgcacatgctagtaatattgtttcagcagtttacttggcaacaggtc |
200 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||| ||||| | |
|
|
| T |
10877949 |
atgctaaaaaaccttaccggttcagccatggctggtgctcttggcggctttaatgcacatgctagtaatattgtttctgcaatttacttggctacaggac |
10877850 |
T |
|
| Q |
201 |
aagatcctgctcaaaatgttgagagttctcattgtatgaccatgatggaagctgttaatgatggcaaggaccttcatatctcagtcactatgccttccat |
300 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10877849 |
aagatcctgctcagaatgttgaaagttctcactgtatgaccatgatggaagccgtgaatgacggaaaggaccttcatatctcagtcactatgccttccat |
10877750 |
T |
|
| Q |
301 |
tgaggt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
10877749 |
tgaggt |
10877744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 10883120 - 10882815
Alignment:
| Q |
1 |
tgaagggagagggaaatcagtggtttgtgaggctgtaattaaggaagaggtggtgaagaaagtgttgaagactagtgtgaagtctttggttgagcttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
10883120 |
tgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtgaagaaagtgctgaagactagtgtggagtctttggttgagcttaac |
10883021 |
T |
|
| Q |
101 |
atgcttaaaaatcttactggttcagccatggctggtgctcttggtggcttcaatgcacatgctagtaatattgtttcagcagtttacttggcaacaggtc |
200 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||| ||||| | |
|
|
| T |
10883020 |
atgctaaaaaaccttaccggttcagccatggctggtgctcttggcggctttaatgcacatgctagtaatattgtttctgcaatttacttggctacaggac |
10882921 |
T |
|
| Q |
201 |
aagatcctgctcaaaatgttgagagttctcattgtatgaccatgatggaagctgttaatgatggcaaggaccttcatatctcagtcactatgccttccat |
300 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10882920 |
aagatcctgctcagaatgttgaaagttctcactgtatgaccatgatggaagccgtgaatgacggaaaggaccttcatatctcagtcactatgccttccat |
10882821 |
T |
|
| Q |
301 |
tgaggt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
10882820 |
tgaggt |
10882815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 10887035 - 10886730
Alignment:
| Q |
1 |
tgaagggagagggaaatcagtggtttgtgaggctgtaattaaggaagaggtggtgaagaaagtgttgaagactagtgtgaagtctttggttgagcttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
10887035 |
tgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagaggtggtgaagaaagtgctgaagactagtgtggagtctttggttgagcttaac |
10886936 |
T |
|
| Q |
101 |
atgcttaaaaatcttactggttcagccatggctggtgctcttggtggcttcaatgcacatgctagtaatattgtttcagcagtttacttggcaacaggtc |
200 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||| ||| |||||||||| ||||| | |
|
|
| T |
10886935 |
atgctaaaaaaccttaccggttcagccatggctggtgcacttggcggctttaacgcacatgctagtaatattgtttctgcaatttacttggctacaggac |
10886836 |
T |
|
| Q |
201 |
aagatcctgctcaaaatgttgagagttctcattgtatgaccatgatggaagctgttaatgatggcaaggaccttcatatctcagtcactatgccttccat |
300 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886835 |
aagatcctgctcagaatgttgaaagttctcactgtatgaccatgatggaagccgtgaatgacggaaaggaccttcatatctcagtcactatgccttccat |
10886736 |
T |
|
| Q |
301 |
tgaggt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
10886735 |
tgaggt |
10886730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 306
Target Start/End: Original strand, 37950226 - 37950440
Alignment:
| Q |
92 |
gagcttaacatgcttaaaaatcttactggttcagccatggctggtgctcttggtggcttcaatgcacatgctagtaatattgtttcagcagtttacttgg |
191 |
Q |
| |
|
||||| |||||||| ||||| ||| ||||||| || | ||||| |||||||||| |||||||| ||||||||||| |||||||| || ||| | | |
|
|
| T |
37950226 |
gagctaaacatgctcaaaaaccttgctggttctgctgttgctggcactcttggtggattcaatgcccatgctagtaacattgtttctgccatttttatag |
37950325 |
T |
|
| Q |
192 |
caacaggtcaagatcctgctcaaaatgttgagagttctcattgtatgaccatgatggaagctgttaatgatggcaaggaccttcatatctcagtcactat |
291 |
Q |
| |
|
| || ||||||||||| |||||||||||||| ||||| ||||| || || ||||||||||| || |||||||| | ||||||||||| ||||| || || |
|
|
| T |
37950326 |
ccactggtcaagatccagctcaaaatgttgaaagttcccattgcataacaatgatggaagccgtaaatgatgggagagaccttcatatttcagtgacaat |
37950425 |
T |
|
| Q |
292 |
gccttccattgaggt |
306 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
37950426 |
gccatccattgaggt |
37950440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 39677299 - 39677363
Alignment:
| Q |
363 |
atgatttatttacatgatattttaataatgcaggtgggtacagttggagggggtacacaacttgc |
427 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39677299 |
atgatttatttacataatattttaataatgcaggtgggtacagttggagggggtacacaacttgc |
39677363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 10048272 - 10048317
Alignment:
| Q |
382 |
ttttaataatgcaggtgggtacagttggagggggtacacaacttgc |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
10048272 |
ttttaataatgcaggtgggtacagttggaggaggcacacagcttgc |
10048317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 30708249 - 30707962
Alignment:
| Q |
20 |
gtggtttgtgaggctgtaattaaggaagaggtggtgaagaaagtgttgaagactagtgtgaagtctttggttgagcttaacatgcttaaaaatcttactg |
119 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| || | |||||||||||||||||||||| || || |||| |
|
|
| T |
30708249 |
gtggtgtgtgaggctgttattaaggaagaggttgtgaagaaagtgttgaagactagtgtggaggcactggttgagcttaacatgcttaagaacctaactg |
30708150 |
T |
|
| Q |
120 |
gttcagccatggctggtgctcttggtggcttcaatgcacatgctagtaatattgtttcagcagtttacttggcaacaggtcaagatcctgctcaaaatgt |
219 |
Q |
| |
|
| |||||| | ||||||||||||||||| |||||||| |||||||| || ||||| || || || ||| | || || ||||||||||||||||| ||||| |
|
|
| T |
30708149 |
gatcagcccttgctggtgctcttggtgggttcaatgctcatgctagcaacattgtctctgctgtctacatagccactggtcaagatcctgctcagaatgt |
30708050 |
T |
|
| Q |
220 |
tgagagttctcattgtatgaccatgatggaagctgttaatgatggcaaggaccttcatatctcagtcactatgccttccattgaggta |
307 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || || ||||| |||||||||||||||||| |
|
|
| T |
30708049 |
ggagagttctcattgtattaccatgatggaagctgtgaatgatggcaaggaccttcacatttctgtcaccatgccttccattgaggta |
30707962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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