View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11773_low_10 (Length: 396)

Name: NF11773_low_10
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11773_low_10
NF11773_low_10
[»] chr2 (10 HSPs)
chr2 (16-396)||(35426364-35426744)
chr2 (293-372)||(38342342-38342421)
chr2 (218-360)||(32978995-32979137)
chr2 (200-352)||(29927730-29927881)
chr2 (202-351)||(35494891-35495030)
chr2 (202-260)||(28814791-28814849)
chr2 (197-261)||(15333274-15333338)
chr2 (291-365)||(3256985-3257059)
chr2 (226-323)||(35978852-35978949)
chr2 (246-314)||(12892838-12892906)
[»] chr7 (6 HSPs)
chr7 (202-359)||(33487183-33487340)
chr7 (300-359)||(42082806-42082865)
chr7 (211-281)||(42082748-42082818)
chr7 (234-316)||(23961617-23961699)
chr7 (246-352)||(24972931-24973037)
chr7 (226-283)||(25244249-25244306)
[»] chr6 (7 HSPs)
chr6 (202-385)||(32549404-32549588)
chr6 (205-384)||(1038297-1038477)
chr6 (202-262)||(214736-214796)
chr6 (230-285)||(1063214-1063269)
chr6 (202-261)||(33013021-33013080)
chr6 (228-270)||(19221076-19221118)
chr6 (200-261)||(11004312-11004373)
[»] chr3 (2 HSPs)
chr3 (202-383)||(1699932-1700113)
chr3 (202-316)||(40362026-40362140)
[»] chr4 (5 HSPs)
chr4 (196-261)||(29010114-29010179)
chr4 (204-365)||(53711686-53711846)
chr4 (202-365)||(47533726-47533889)
chr4 (202-300)||(9675023-9675121)
chr4 (192-261)||(22579222-22579291)
[»] chr1 (4 HSPs)
chr1 (203-360)||(37543770-37543926)
chr1 (202-355)||(9688212-9688364)
chr1 (204-261)||(36258331-36258388)
chr1 (201-261)||(33150312-33150372)
[»] chr8 (2 HSPs)
chr8 (226-323)||(32703253-32703350)
chr8 (202-316)||(951337-951451)
[»] chr5 (2 HSPs)
chr5 (226-363)||(10324943-10325079)
chr5 (202-261)||(39043607-39043666)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 35426744 - 35426364
Alignment:
Q  16 acatcatactctctagagaacaagaattccacttatcggagactagcaactcaaagtcctcatcacgttttatgtttcttctagaaacagccataaaatt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35426744 acatcatactctctagagaacaagaattccacttatcggagactagcaactcaaagtcctcatcacgttttatgtttcttctagaaacagccttaaaatt 35426645  T
Q  116 ccttatgtaatggagaaaatgagggggaggggacagaaaggggtatttaatgttaatcttattgactcaattctcttaaaaattaggaaaattgcttttc 215  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35426644 ccttatgtaatggagaaaatgggggggaggggacagaaaggggtatttaatgttaatcttattgactcaattctcttaaaaattaggaaaattgcttttc 35426545  T
Q  216 acacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaattcattgacagttaac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||     
T  35426544 acacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcaacagttaactcctgtcggttaaaattcattgacagttaat 35426445  T
Q  316 ttccgatgggtttacattggtaatttcgtggtgtttcatagcaacttttacgtgggattatcaattttctaaaactcgacc 396  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35426444 tgccgatgggtttacattggtaatttcgtggtgtttcatagcaacttttacgtgggattatcaattttctaaaactcgacc 35426364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 293 - 372
Target Start/End: Original strand, 38342342 - 38342421
Alignment:
Q  293 gttaaaattcattgacagttaacttccgatgggtttacattggtaatttcgtggtgtttcatagcaacttttacgtggga 372  Q
    |||||||||||| ||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||| ||||||||    
T  38342342 gttaaaattcatagacagttaactgccgatgaggttatattggtaatttcgtggtgtttcatagcaactttgacgtggga 38342421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 218 - 360
Target Start/End: Complemental strand, 32979137 - 32978995
Alignment:
Q  218 acttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaattcattgacagttaactt 317  Q
    |||||||  ||||||||||||||||| ||||||| ||||||||| | |||||   || ||| |||||| |||||  ||||||||||| | |||||||||     
T  32979137 acttcacaaaatgctaagaaacatcataaaatgataaatttaaccccaaattccttcaacaattaactactgtcgattaaaattcatcggcagttaacta 32979038  T
Q  318 ccgatgggtttacattggtaatttcgtggtgtttcatagcaac 360  Q
    || ||| ||||| |||| |||||| |||||||||| |||||||    
T  32979037 ccaatgagtttatattgataattttgtggtgtttcctagcaac 32978995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 352
Target Start/End: Complemental strand, 29927881 - 29927730
Alignment:
Q  200 aggaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaa 299  Q
    ||||||||||| ||||||||||||| ||||||||| ||  | ||  |||||| ||||||||| | |||||| ||||  ||||||||   ||| |||||||    
T  29927881 aggaaaattgcctttcacacttcacacaatgctaaaaattaccatgaaatgataaatttaaccccaaatttcatcgg-agttaactatcgtcggttaaaa 29927783  T
Q  300 ttcattgacagttaacttccgatgggtttacattggtaatttcgtggtgtttc 352  Q
    | |||   ||||||||| |||||| | ||| ||||||||||||||||||||||    
T  29927782 tccatcagcagttaactgccgatgaggttatattggtaatttcgtggtgtttc 29927730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 351
Target Start/End: Original strand, 35494891 - 35495030
Alignment:
Q  202 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactct-aaattttatcgacagttaactcctgtcagttaaaat 300  Q
    |||||||| |||||||||||||||||||| |||||||          |||||||||||| ||| |||||| ||||| |||||| | |  || ||||||||    
T  35494891 gaaaattgtttttcacacttcactcaatgttaagaaa----------tgacaaatttaa-tctcaaatttcatcgatagttaattaccatcggttaaaat 35494979  T
Q  301 tcattgacagttaacttccgatgggtttacattggtaatttcgtggtgttt 351  Q
    |||| | ||||||||| |||||||  ||| |||| ||||||||||||||||    
T  35494980 tcatcggcagttaactgccgatggagttatattgataatttcgtggtgttt 35495030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 28814849 - 28814791
Alignment:
Q  202 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaa 260  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||  |||||||||| ||||    
T  28814849 gaaaattgcttttcaaacttcactcaatgctaataaacaccatgaaatgacaaaattaa 28814791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 15333338 - 15333274
Alignment:
Q  197 attaggaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaac 261  Q
    |||| |||||||||||||| |||||||  ||| | |||||||||||| |||||||||| ||||||    
T  15333338 attatgaaaattgcttttcccacttcaaacaaagttaagaaacatcataaaatgacaagtttaac 15333274  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 3257059 - 3256985
Alignment:
Q  291 cagttaaaattcattgacagttaacttccgatgggtttacattggtaatttcgtggtgtttcatagcaactttta 365  Q
    |||||||||||||||| || |||| | |||||| | |||  |||||||||| |||||||||| ||||||| ||||    
T  3257059 cagttaaaattcattggcaattaattgccgatgaggttatgttggtaattttgtggtgtttcgtagcaaccttta 3256985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 323
Target Start/End: Complemental strand, 35978949 - 35978852
Alignment:
Q  226 caatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaattcattgacagttaacttccgatg 323  Q
    ||||||||||||||| ||  |||||| || ||||| ||| ||||| |||||||||||||| |  || |||||||  | |||| |||||||| ||||||    
T  35978949 caatgctaagaaacaccactaaatgataattttaattctgaatttcatcgacagttaactgccatcggttaaaaacctttgatagttaactaccgatg 35978852  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 12892838 - 12892906
Alignment:
Q  246 aaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaattcattgacagttaa 314  Q
    |||||| ||||||||| | || |||  ||||||||||||| | ||| ||||||||||||||||| ||||    
T  12892838 aaatgataaatttaaccccaattttcgtcgacagttaactaccgtcggttaaaattcattgacacttaa 12892906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 202 - 359
Target Start/End: Original strand, 33487183 - 33487340
Alignment:
Q  202 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaatt 301  Q
    |||||||||||||||||||| |||||||||||||||||| || ||||| ||||||||||||  ||||| |||||  ||||||||     | |||||||||    
T  33487183 gaaaattgcttttcacactttactcaatgctaagaaacaccataaaataacaaatttaacttcaaattctatcggtagttaactatcagcggttaaaatt 33487282  T
Q  302 cattgacagttaacttccgatgggtttacattggtaatttcgtggtgtttcatagcaa 359  Q
    ||| | ||||||||| || || || ||| |||| ||||||||||||||||||||||||    
T  33487283 catcggcagttaactgcccatagggttatattgataatttcgtggtgtttcatagcaa 33487340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 42082806 - 42082865
Alignment:
Q  300 ttcattgacagttaacttccgatgggtttacattggtaatttcgtggtgtttcatagcaa 359  Q
    ||||| ||||||| ||| || ||||| ||| |||||||||||||||||||||||||||||    
T  42082806 ttcatcgacagtttactaccaatgggattatattggtaatttcgtggtgtttcatagcaa 42082865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 42082748 - 42082818
Alignment:
Q  211 ttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagtt 281  Q
    ||||||||||||| || ||||||||||||| ||  ||||||||||||||||   |||||| ||||||||||    
T  42082748 ttttcacacttcattcgatgctaagaaacaccatgaaatgacaaatttaacctcaaatttcatcgacagtt 42082818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 23961617 - 23961699
Alignment:
Q  234 agaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaattcattgacagttaact 316  Q
    ||||||||||| |||| |||| ||||||||| | ||  |||||||||||||| |   | |||||||| |||||||||||||||    
T  23961617 agaaacatcagtaaataacaattttaactctgatttccatcgacagttaactaccaccggttaaaatccattgacagttaact 23961699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 352
Target Start/End: Complemental strand, 24973037 - 24972931
Alignment:
Q  246 aaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaattcattgacagttaacttccgatgggtttacattggtaatttcgtg 345  Q
    |||||||||||||||||| || ||  ||||| |||||||| | | | |||||||| ||| | |||||||||  |||||   ||| |||||||||||||||    
T  24973037 aaatgacaaatttaactccaatttccatcgatagttaactaccgccggttaaaatccatcggcagttaactgtcgatgatgttatattggtaatttcgtg 24972938  T
Q  346 gtgtttc 352  Q
     ||||||    
T  24972937 atgtttc 24972931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 25244306 - 25244249
Alignment:
Q  226 caatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaa 283  Q
    ||||||||||||||||| | |||||| || ||||| || |||||| ||||||||||||    
T  25244306 caatgctaagaaacatctgtaaatgataattttaattccaaatttcatcgacagttaa 25244249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 202 - 385
Target Start/End: Original strand, 32549404 - 32549588
Alignment:
Q  202 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaatt 301  Q
    |||||||| |||||||| ||||| ||||||||||||||| ||  ||||||||| |||||| | |||||| ||||  ||||||||   ||| |||||||||    
T  32549404 gaaaattgtttttcacatttcacacaatgctaagaaacaccattaaatgacaagtttaaccccaaatttcatcggtagttaactatcgtcggttaaaatt 32549503  T
Q  302 cattgacagttaacttccgatgggtttacattggtaatttcgtggtgtttcatagcaactttt-acgtgggattatcaattttct 385  Q
    ||| | ||||||| |  |||||   ||| |||||||||||||||||||||||||||||||||| | ||||||  |||||||||||    
T  32549504 catcggcagttaattgtcgatgaagttatattggtaatttcgtggtgtttcatagcaacttttgatgtgggaacatcaattttct 32549588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 384
Target Start/End: Complemental strand, 1038477 - 1038297
Alignment:
Q  205 aattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaattcat 304  Q
    |||| ||||||||||||||||||||||||||||||||||  | || | ||||||||||  |||||  ||| ||| |||||| | ||| | ||||||||||    
T  1038477 aattacttttcacacttcactcaatgctaagaaacatcatgatatcataaatttaacttcaaattccatcaacaattaactaccgtcggataaaattcat 1038378  T
Q  305 tgacagttaacttccgatgggtttacattggtaatttcgtggtgtttcatagcaa-cttttacgtgggattatcaattttc 384  Q
     | ||||||||| | ||  |  ||| ||||||||||| || |||||||||| ||| |||| | ||||||  ||||||||||    
T  1038377 cggcagttaactactgaaagagttatattggtaattttgttgtgtttcataacaacctttgatgtgggaacatcaattttc 1038297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 214736 - 214796
Alignment:
Q  202 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaact 262  Q
    |||||||| ||||| |||||||  |||||||||||||||| |  |||||||||||||||||    
T  214736 gaaaattgtttttcccacttcatacaatgctaagaaacattatgaaatgacaaatttaact 214796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 1063269 - 1063214
Alignment:
Q  230 gctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaact 285  Q
    ||||||||||| || |||||||| ||||||||||||| |||  |||||||||||||    
T  1063269 gctaagaaacaccataaaatgacgaatttaactctaattttcttcgacagttaact 1063214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 33013021 - 33013080
Alignment:
Q  202 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaac 261  Q
    |||||||||||||| |||||||| |||| ||| |||||| || ||||||| |||||||||    
T  33013021 gaaaattgcttttcgcacttcacgcaatactatgaaacaccataaaatgataaatttaac 33013080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 19221118 - 19221076
Alignment:
Q  228 atgctaagaaacatcagaaaatgacaaatttaactctaaattt 270  Q
    ||||||||||| ||||  |||||||||||||||||||||||||    
T  19221118 atgctaagaaatatcatgaaatgacaaatttaactctaaattt 19221076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 11004373 - 11004312
Alignment:
Q  200 aggaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaac 261  Q
    ||||||||| |||||  |||||||| ||| |||||||||||| | |||||||||| ||||||    
T  11004373 aggaaaatttctttttccacttcacacaaagctaagaaacattataaaatgacaagtttaac 11004312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 383
Target Start/End: Original strand, 1699932 - 1700113
Alignment:
Q  202 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaatt 301  Q
    ||||||||  ||||||||||||| ||||||||||||||| ||  |||| |||||||||||   |||||  |||| | ||||||| | ||||||||||||     
T  1699932 gaaaattgtctttcacacttcacacaatgctaagaaacaccatgaaataacaaatttaacctcaaattccatcggccgttaactaccgtcagttaaaatc 1700031  T
Q  302 cattgacagttaacttccgatgggtttacattggtaatttcgtggtgtttcatagcaacttttacgtgggattatcaatttt 383  Q
    ||||||||||||||| ||| || | ||| |||||||||||| | ||||||| ||||||| || | ||||||  |||||||||    
T  1700032 cattgacagttaactgccggtgagattatattggtaatttcatagtgtttcctagcaaccttgaagtgggaacatcaatttt 1700113  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 316
Target Start/End: Complemental strand, 40362140 - 40362026
Alignment:
Q  202 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaatt 301  Q
    ||||||||| ||||||| ||||  ||||||||||||||| || ||||||| ||||||||| | |||||| || || |||||||| | ||| ||||||||     
T  40362140 gaaaattgcctttcacatttcatacaatgctaagaaacaccataaaatgaaaaatttaaccccaaatttcattgatagttaactaccgtcggttaaaatc 40362041  T
Q  302 cattgacagttaact 316  Q
    ||| |||||||||||    
T  40362040 catcgacagttaact 40362026  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 29010179 - 29010114
Alignment:
Q  196 aattaggaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaac 261  Q
    |||| |||||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||    
T  29010179 aatttggaaaaatgcttttcacacttcattcaatgctaagaaacaccataaaatgacaaatttaac 29010114  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 365
Target Start/End: Original strand, 53711686 - 53711846
Alignment:
Q  204 aaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaattca 303  Q
    |||||| ||||||||||||||||||  |||||||||| ||  ||||||||||||||||  ||||||| || |  |||||| |   |   |||||||||||    
T  53711686 aaattgtttttcacacttcactcaacactaagaaaca-catgaaatgacaaatttaaccttaaatttcattgttagttaattatcgctggttaaaattca 53711784  T
Q  304 ttgacagttaacttccgatgggtttacattggtaatttcgtggtgtttcatagcaactttta 365  Q
    |  |||||||||| || ||| | |||  ||||||| || |||||||||||||||||| ||||    
T  53711785 tcaacagttaactgcccatgagattatgttggtaaatttgtggtgtttcatagcaaccttta 53711846  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 365
Target Start/End: Complemental strand, 47533889 - 47533726
Alignment:
Q  202 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaatt 301  Q
    ||||||||| ||||||||||||| |||||||||||||||  |  |||||| |||||||||   |||||| ||||   ||||||| | | |||| ||||||    
T  47533889 gaaaattgcctttcacacttcacgcaatgctaagaaacacaattaaatgataaatttaacctcaaatttcatcggtcgttaactaccgccagtcaaaatt 47533790  T
Q  302 cattgacagttaacttccgatgggtttacattggtaatttcgtggtgtttcatagcaactttta 365  Q
    ||| | |||| ||||  |||||   ||| |||||||| || |||||||||| || |||| ||||    
T  47533789 catcggcagtcaactgtcgatgaagttatattggtaaatttgtggtgtttcctaacaaccttta 47533726  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 9675121 - 9675023
Alignment:
Q  202 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaat 300  Q
    |||||||||||||| |||||||| ||| | |||||||||  |  |||| |||| |||||| |||||||||||||| ||||| ||   ||||||||||||    
T  9675121 gaaaattgcttttctcacttcacacaaagttaagaaacactatgaaatcacaagtttaaccctaaattttatcgatagttatctgtcgtcagttaaaat 9675023  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 22579222 - 22579291
Alignment:
Q  192 taaaaattaggaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaac 261  Q
    ||||||||  ||||||| ||||||| ||||||||||||||||| |||||  | ||||||  |||||||||    
T  22579222 taaaaattttgaaaattacttttcatacttcactcaatgctaaaaaacactataaaatggtaaatttaac 22579291  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 360
Target Start/End: Complemental strand, 37543926 - 37543770
Alignment:
Q  203 aaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaattc 302  Q
    ||||||| ||||||||||||||||||| ||||| ||||  | ||||||| ||||||||| ||||||||||| |  |||||||| ||| | | | |||| |    
T  37543926 aaaattgtttttcacacttcactcaatactaaggaacactataaaatgaaaaatttaaccctaaattttattggtagttaactactg-ccgattaaatcc 37543828  T
Q  303 attgacagttaacttccgatgggtttacattggtaatttcgtggtgtttcatagcaac 360  Q
    || | |||||||||   |||||| ||   ||||| |||| ||||||||||||||||||    
T  37543827 atcggcagttaactgttgatggggttgtgttggtgattttgtggtgtttcatagcaac 37543770  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 355
Target Start/End: Original strand, 9688212 - 9688364
Alignment:
Q  202 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaatt 301  Q
    |||| |||||||| |||||| |||||||| ||| ||| | || ||||||| ||||||||||  ||||| ||| |||| |||| | | | | |||||||||    
T  9688212 gaaagttgctttttacactttactcaatgttaaaaaataccataaaatgataaatttaacttcaaattctattgacaattaattaccg-cggttaaaatt 9688310  T
Q  302 cattgacagttaacttccgatgggtttacattggtaatttcgtggtgtttcata 355  Q
     |||| ||||||||| |||||    ||| ||| |||||||||||||||||||||    
T  9688311 tattggcagttaactgccgataatattatattagtaatttcgtggtgtttcata 9688364  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 36258331 - 36258388
Alignment:
Q  204 aaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaac 261  Q
    ||||||||||| |||| |||| ||| ||||||||||| ||  ||||||||||||||||    
T  36258331 aaattgcttttgacacgtcacacaaagctaagaaacaccatgaaatgacaaatttaac 36258388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 33150312 - 33150372
Alignment:
Q  201 ggaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaac 261  Q
    |||||||||| ||||||| || || | |||||||||||||  | |||||||||||||||||    
T  33150312 ggaaaattgcatttcacaatttacacgatgctaagaaacactataaaatgacaaatttaac 33150372  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 323
Target Start/End: Complemental strand, 32703350 - 32703253
Alignment:
Q  226 caatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaattcattgacagttaacttccgatg 323  Q
    ||||||||||||| ||||  |||||| ||||||||| | || |||||| ||||||||||| ||||| ||||||||  || | ||||||||| ||||||    
T  32703350 caatgctaagaaaaatcatgaaatgataaatttaacgccaatttttattgacagttaactactgtcggttaaaatctatcggcagttaactaccgatg 32703253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 316
Target Start/End: Complemental strand, 951451 - 951337
Alignment:
Q  202 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaatt 301  Q
    |||||||| ||||  |||||||| | | |||||||||||  |  |||| ||||||||||   ||||||||||||| |||||||| ||||| |||||||||    
T  951451 gaaaattgttttttccacttcacacgaagctaagaaacactatgaaataacaaatttaatcttaaattttatcgatagttaactactgtcggttaaaatt 951352  T
Q  302 cattgacagttaact 316  Q
    ||  | |||||||||    
T  951351 cagcggcagttaact 951337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 363
Target Start/End: Original strand, 10324943 - 10325079
Alignment:
Q  226 caatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcgacagttaactcctgtcagttaaaattcattgacagttaacttccgatggg 325  Q
    ||||||||||||||||||  ||||||||  |||||| |||||||| |||| ||||||||| | ||| ||| ||| |||||| || ||||||  ||| | |    
T  10324943 caatgctaagaaacatcaataaatgacatttttaaccctaaatttcatcggcagttaactaccgtcggtt-aaactcattggcatttaactgtcgaagag 10325041  T
Q  326 tttacattggtaatttcgtggtgtttcatagcaacttt 363  Q
     ||| ||||||| |||| ||||||||| ||||| ||||    
T  10325042 gttatattggtattttcctggtgtttcctagcaccttt 10325079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 39043666 - 39043607
Alignment:
Q  202 gaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaac 261  Q
    ||||||||| ||| ||||||||| ||||||||||||||| ||  ||| ||||||||||||    
T  39043666 gaaaattgccttttacacttcacacaatgctaagaaacaccatgaaaggacaaatttaac 39043607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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