View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11773_low_11 (Length: 388)
Name: NF11773_low_11
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11773_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 170251 - 170601
Alignment:
| Q |
18 |
acttctcgtatttgtaatggaagataaatttacagattcacttggtataaaactattagaaacgtaaatcatcattgcatatctattatgttagttttgt |
117 |
Q |
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| T |
170251 |
acttcttgtatttgtaatggaagataaatttacagattcacttggtataaaactattagaaacgtaaatcatcattgcatatctattatgttagttttgt |
170350 |
T |
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| Q |
118 |
aaccacttaaattatctgcaaccatgttgccgatgagaaaaaggagcttacaagtaaagaagggtcttatacgaaagagagaagctagtatgctttatag |
217 |
Q |
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| T |
170351 |
aaccacttaaattatctgcaaccatgttgccgatgagaaaaaggagcttacaagcaaagaagggtcttatacgaaagagagaagctagtatgctttatag |
170450 |
T |
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| Q |
218 |
tcatctttgtaatacttaattttttcaatatttactttcattcaattatcttgttggcatatatatatttctctgttttaagtgggcggtgggcactaag |
317 |
Q |
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| T |
170451 |
tcatctttgtaatacttaattttttcaatatttactttcattcaattatcttgttggcatagatatatt--tctgttttaagtgggcggtgggcactaag |
170548 |
T |
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| Q |
318 |
atctggtgatctaccattataggtggagcaactgcataaaatcttcaagctct |
370 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
170549 |
atctggtgatctaccattatagttggagcaactgcataaaatcttcaagctct |
170601 |
T |
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