View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11773_low_12 (Length: 385)
Name: NF11773_low_12
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11773_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 385
Target Start/End: Original strand, 10341027 - 10341397
Alignment:
| Q |
14 |
atgaagaagtgaagaagcaaagtatgatgattatatgataaaagtcactttaagagttatattccatatataaaggaacataattatatcacccttgaca |
113 |
Q |
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| T |
10341027 |
atgaagaagtgaagaagcaaagtatgatgattatatgataaaagtcactttaagagttatattccatatataaaggaacataattatatcacccttgaca |
10341126 |
T |
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| Q |
114 |
tttgtcattttcattagatgttaggtatttagtcatataagcaacnnnnnnnggagtgatggtggttacaaagagttgtttctttcaatgattgagggtt |
213 |
Q |
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| T |
10341127 |
tttgtcattttcattagatgttaggtatttagtcatataagcaacaaaaaaaggagtgatggtggttacaaagagttgtttctttcaatgattgagggtt |
10341226 |
T |
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| Q |
214 |
tcatgatggttttaataaatcaacaaagctaaggaagtagttccggtatggtccaaaagggtgaccaaccctgcaccacttgggtgggccagattttcgg |
313 |
Q |
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| T |
10341227 |
tcatgatgg-tttaataaatcaacaaagctaaggaagtagttctggtatagtccaaaagggtgaccaaacctgcaccaattgggtgggccagattgtctg |
10341325 |
T |
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| Q |
314 |
agatcccctttgagattgagttgagcttatggtgtcgtcctcgtctcgaaaagttcattccctaaacgcaca |
385 |
Q |
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| T |
10341326 |
agatccactttgagattgagttgagcttatggtgtcgtcggagtctcgaatagatcattcactaaacgcaca |
10341397 |
T |
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