View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11773_low_13 (Length: 342)
Name: NF11773_low_13
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11773_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 35426364 - 35426039
Alignment:
| Q |
1 |
cttaccatctcttaaaattattgggcttaactgtgttggacctttcgccttgtataggcccttttgtgagacacggatactgctcccaaaattttcagtt |
100 |
Q |
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| T |
35426364 |
cttaccatctcttaaaattattgggcttaactgtgttggacctttcgccttgtataggcccttttgtgacacacggatactgctcccaaaattttcagtt |
35426265 |
T |
|
| Q |
101 |
ctgcatactagatgatgtgctgtttttagaaatgtggagtatggaaaaagaaacttannnnnnnnatccttcgattcacctcctagagaaattttttggt |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
35426264 |
ctgcatactagatgatgtgctgtttttagaaatatggagtatggaaaaagaaacttattttttttatccttcgattcacctcctagagaaatttttcggt |
35426165 |
T |
|
| Q |
201 |
cgttccaatttaatttctcaatgattaaggtgttgtcatgctagtcctcaatatttttcctttcaaaatcatctatatatacaaaaggttaaaatggtaa |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
35426164 |
cgttccaatttaatttctcaatgattaacgtgttgtcatgctagtcctcaatacttttcctttcaaattcatctatctatacaaaaggttaaaatggtaa |
35426065 |
T |
|
| Q |
301 |
cacaaaaggattatttggtcgcaact |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
35426064 |
cacaaaaggattatttggtcgcaact |
35426039 |
T |
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