View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11773_low_14 (Length: 307)
Name: NF11773_low_14
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11773_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 6466605 - 6466330
Alignment:
| Q |
18 |
cagagaacaagagcaaaacaaatgcaaagattccagcttcgcaaacaataatcataagcattagttcataacaatctatattgtattgnnnnnnnnttac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6466605 |
cagagaacaagagcaaaacaaatgcaaagattccagcttcgcaaacaataatcataagcattagttcataacaatctatattgtattgaaaaaaaattac |
6466506 |
T |
|
| Q |
118 |
caatcgtgaaggtttgatttaacatcatacgtccatcttcattgtttcctgaaaataaaaatagtaagaataattgttacaaacataactctgaaatatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6466505 |
caatcgtgaaggtttgatttaacatcatacgtccatcttcattgtttcctgaaaataaaaatagtaagaataattgttacaaacataactctgaaatatt |
6466406 |
T |
|
| Q |
218 |
ttgaggtttggagaaaaagtattgaaagattatgaaatgtttttaatataaaataagggtcgctaactgatgtcca |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6466405 |
ttgaggtttggagaaaaagtattgaaagattatgaaatgtttttaatataaaataagggtcgctaactgatgtcca |
6466330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University