View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11773_low_16 (Length: 281)

Name: NF11773_low_16
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11773_low_16
NF11773_low_16
[»] chr1 (12 HSPs)
chr1 (43-268)||(4955991-4956216)
chr1 (1-52)||(22077607-22077658)
chr1 (1-52)||(66584-66635)
chr1 (1-52)||(39066312-39066363)
chr1 (1-54)||(22077940-22077993)
chr1 (5-52)||(5320081-5320128)
chr1 (1-52)||(24600426-24600477)
chr1 (1-52)||(34364502-34364553)
chr1 (1-52)||(41184537-41184588)
chr1 (1-52)||(44685451-44685502)
chr1 (1-52)||(66200-66252)
chr1 (8-52)||(1188707-1188751)
[»] chr4 (7 HSPs)
chr4 (1-52)||(3244561-3244612)
chr4 (1-52)||(54741288-54741339)
chr4 (1-52)||(2740695-2740746)
chr4 (1-52)||(10245915-10245966)
chr4 (1-52)||(25483331-25483382)
chr4 (1-46)||(16888926-16888971)
chr4 (1-46)||(16889646-16889691)
[»] scaffold0078 (1 HSPs)
scaffold0078 (1-52)||(5352-5403)
[»] chr8 (4 HSPs)
chr8 (1-52)||(41972153-41972204)
chr8 (1-57)||(9608735-9608791)
chr8 (1-53)||(45122169-45122221)
chr8 (1-54)||(40518575-40518628)
[»] chr7 (6 HSPs)
chr7 (5-52)||(28301659-28301706)
chr7 (1-52)||(16569191-16569242)
chr7 (1-52)||(16596420-16596471)
chr7 (1-52)||(43241490-43241541)
chr7 (1-54)||(36622953-36623006)
chr7 (4-52)||(36967344-36967392)
[»] chr5 (5 HSPs)
chr5 (1-52)||(41632777-41632828)
chr5 (8-52)||(31509618-31509662)
chr5 (1-52)||(26074258-26074309)
chr5 (5-52)||(36568683-36568730)
chr5 (3-52)||(1028631-1028680)
[»] chr3 (7 HSPs)
chr3 (8-52)||(47965034-47965078)
chr3 (5-52)||(9240144-9240191)
chr3 (1-52)||(33175776-33175827)
chr3 (1-52)||(49336799-49336850)
chr3 (8-52)||(12747871-12747915)
chr3 (1-49)||(21832455-21832503)
chr3 (11-55)||(39336351-39336395)
[»] chr6 (2 HSPs)
chr6 (5-52)||(10074107-10074154)
chr6 (1-52)||(16107673-16107724)
[»] chr2 (4 HSPs)
chr2 (1-52)||(962593-962644)
chr2 (1-52)||(28531426-28531477)
chr2 (8-52)||(30313173-30313217)
chr2 (8-52)||(33561570-33561614)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 43 - 268
Target Start/End: Complemental strand, 4956216 - 4955991
Alignment:
Q  43 ttgcacacaatagaactacatgctacaacctatatttcctttctctacttttttagaactgcatgcaagttctaagaacttaccagaaatctttgttgcn 142  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4956216 ttgcacacaatagaactacctgctgccacctatatttcctttctctacttttttagaactgcatgcaagttctaagaacttaccagaaatctttgttgca 4956117  T
Q  143 nnnnnngtttaataaaagcaagagttgtcatcttttgacctaaaaactagattagacaaattaataatacttaactttaatttttgaaaaagaataatca 242  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956116 aaaaaagtttaataaaagcaagagttgtcatcttttgacctaaaaactagattagacaaattaataatacttaactttaatttttgaaaaagaataatca 4956017  T
Q  243 tagacggatatagatatgaatttgat 268  Q
    || || |||||||||||| |||||||    
T  4956016 taaacagatatagatatggatttgat 4955991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22077607 - 22077658
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  22077607 aacctttacttttctatccgatgtgagacatataactcacacttgcacacaa 22077658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 66584 - 66635
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||||||||||||||| || | |||||||||||| |||||||||||    
T  66584 aacctttacttttctatccgatatggaacatataactcacacttgcacacaa 66635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39066312 - 39066363
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||||||||||||||||| |  ||||||||||| |||||||||||    
T  39066312 aacctttacttttctatccgatgtggaatatataactcacacttgcacacaa 39066363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22077940 - 22077993
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaata 54  Q
    |||||||| ||||||||||||| | || |||||||||||| |||||||||||||    
T  22077940 aacctttatttttctatccgatttaaaacatataactcacacttgcacacaata 22077993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 5320081 - 5320128
Alignment:
Q  5 tttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||||||||||||| | |||||||||||| |||||| ||||    
T  5320081 tttacttttctatccgatgtggaacatataactcacacttgcatacaa 5320128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24600426 - 24600477
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||||||||||||||| ||   |||||||||||| |||||||||||    
T  24600426 aacctttacttttctatccgatatgggacatataactcacacttgcacacaa 24600477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 34364553 - 34364502
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||| || ||||||||||||  |||||||||||| |||||||||||    
T  34364553 aacctttactattttatccgatgtgagacatataactcacacttgcacacaa 34364502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 41184537 - 41184588
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||| || ||||||||||||  |||||||||||| |||||||||||    
T  41184537 aacctttactattttatccgatgtgagacatataactcacacttgcacacaa 41184588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44685502 - 44685451
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||||||||||||||| ||   |||||||||||| |||||||||||    
T  44685502 aacctttacttttctatccgatatgggacatataactcacacttgcacacaa 44685451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 66200 - 66252
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcat-ataactcacccttgcacacaa 52  Q
    ||||||||||||||||||||||||||  ||| || |||||| |||||||||||    
T  66200 aacctttacttttctatccgatgtgagacatgattactcacacttgcacacaa 66252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 1188707 - 1188751
Alignment:
Q  8 acttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||||||| || | |||||||||||| |||||||||||    
T  1188707 acttttctatccgatatggaacatataactcacacttgcacacaa 1188751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3244561 - 3244612
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  3244561 aacctttacttttctatccgatgtgagacatataactcacacttgcacacaa 3244612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 54741288 - 54741339
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||||||||||||||||||  ||||||| |||| |||||||||||    
T  54741288 aacctttacttttctatccgatgtgagacatataattcacacttgcacacaa 54741339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2740746 - 2740695
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||| ||||||||||||||   |||||||||||| |||||||||||    
T  2740746 aacctttactgttctatccgatgtgggacatataactcacacttgcacacaa 2740695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10245966 - 10245915
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||| || |||||||||||  ||||||||||||| |||||||||||    
T  10245966 aacctttactcttttatccgatgtggggcatataactcacacttgcacacaa 10245915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25483382 - 25483331
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||| || ||||||||||||  |||||||||||| |||||||||||    
T  25483382 aacctttactattttatccgatgtgagacatataactcacacttgcacacaa 25483331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16888926 - 16888971
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgc 46  Q
    |||||||||||||||||||||||||   |||||||||||| |||||    
T  16888926 aacctttacttttctatccgatgtgggacatataactcacacttgc 16888971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16889646 - 16889691
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgc 46  Q
    |||||||||||||||||||||| |||  |||||||||||| |||||    
T  16889646 aacctttacttttctatccgatttgagacatataactcacacttgc 16889691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5403 - 5352
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||| |||||||||||||| | |||||||||||| |||||||||||    
T  5403 aacctttactgttctatccgatgtggaacatataactcacacttgcacacaa 5352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41972204 - 41972153
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||||||||||||||||||   |||||||||||| |||||||||||    
T  41972204 aacctttacttttctatccgatgtgggacatataactcacacttgcacacaa 41972153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9608791 - 9608735
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaatagaa 57  Q
    |||||||||||||||||||||| ||   |||||||||||| ||||||||||| ||||    
T  9608791 aacctttacttttctatccgatatgggacatataactcacacttgcacacaacagaa 9608735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 45122169 - 45122221
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaat 53  Q
    |||||||||| || ||||||||||||  |||||||||||| ||||||||||||    
T  45122169 aacctttactattttatccgatgtgagacatataactcacacttgcacacaat 45122221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40518628 - 40518575
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaata 54  Q
    |||||||||||||||||| ||||||   |||||||||||| |||| ||||||||    
T  40518628 aacctttacttttctatctgatgtgggacatataactcacacttgaacacaata 40518575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 28301659 - 28301706
Alignment:
Q  5 tttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||||    
T  28301659 tttacttttctatccgatgtgagacatataactcacacttgcacacaa 28301706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16569242 - 16569191
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||| |||||||||||||||  |||||||||||| |||||| ||||    
T  16569242 aacctttactgttctatccgatgtgagacatataactcacacttgcatacaa 16569191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16596420 - 16596471
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||| |||||||||||||||  |||||||||||| |||||| ||||    
T  16596420 aacctttactgttctatccgatgtgagacatataactcacacttgcatacaa 16596471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43241541 - 43241490
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||| |||| ||||||||||| | |||||||||||| |||||||||||    
T  43241541 aacctttatttttttatccgatgtggaacatataactcacacttgcacacaa 43241490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36623006 - 36622953
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaata 54  Q
    |||||||||| || |||||||||||   |||||||||||| |||||||||||||    
T  36623006 aacctttactattttatccgatgtgggacatataactcacacttgcacacaata 36622953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 36967344 - 36967392
Alignment:
Q  4 ctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||| ||||||||||||  |||||||||||| |||| ||||||    
T  36967344 ctttacttttttatccgatgtgagacatataactcacacttgtacacaa 36967392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41632828 - 41632777
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||||||||||||||||||  ||||||||| || |||||||||||    
T  41632828 aacctttacttttctatccgatgtgagacatataacttacacttgcacacaa 41632777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 31509662 - 31509618
Alignment:
Q  8 acttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||||||||||||  |||||||||||| |||||||||||    
T  31509662 acttttctatccgatgtgagacatataactcacacttgcacacaa 31509618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26074258 - 26074309
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||||| |||||||||||   |||||||||||| |||||||||||    
T  26074258 aacctttacttttttatccgatgtgtgacatataactcacacttgcacacaa 26074309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 36568683 - 36568730
Alignment:
Q  5 tttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||||||||||||||   |||||||||||| |||||||||||    
T  36568683 tttacttttctatccgatgtgggacatataactcacacttgcacacaa 36568730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 1028631 - 1028680
Alignment:
Q  3 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||||||||||||||||   |||||||||||| |||| ||||||    
T  1028631 cctttacttttctatccgatgtgggacatataactcacacttgtacacaa 1028680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 47965034 - 47965078
Alignment:
Q  8 acttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||||||||| || |||||||||||| |||||||||||    
T  47965034 acttttctatccgatgtaaaacatataactcacacttgcacacaa 47965078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 9240191 - 9240144
Alignment:
Q  5 tttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||| ||||||||||||| | |||||||||||| |||||||||||    
T  9240191 tttacttctctatccgatgtggaacatataactcacacttgcacacaa 9240144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33175776 - 33175827
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||||||||||| |||||||  |||||||||||| |||| ||||||    
T  33175776 aacctttacttttctatctgatgtgagacatataactcacacttgtacacaa 33175827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 49336799 - 49336850
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||||||||||||||||||  ||| |||||||| |||| ||||||    
T  49336799 aacctttacttttctatccgatgtgagacatgtaactcacacttgtacacaa 49336850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 12747871 - 12747915
Alignment:
Q  8 acttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||||||||||   |||||||||||| |||||||||||    
T  12747871 acttttctatccgatgtgggacatataactcacacttgcacacaa 12747915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21832455 - 21832503
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcaca 49  Q
    ||||||||||||||||||| |||||   |||||||||||| ||||||||    
T  21832455 aacctttacttttctatccaatgtgggacatataactcacacttgcaca 21832503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 39336351 - 39336395
Alignment:
Q  11 tttctatccgatgtgaagcatataactcacccttgcacacaatag 55  Q
    |||||||||||||||   |||||||||||| ||||||||||||||    
T  39336351 tttctatccgatgtgggacatataactcacacttgcacacaatag 39336395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 10074107 - 10074154
Alignment:
Q  5 tttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||||||||||||||    |||||||||||||||||||||||    
T  10074107 tttacttttctatccgatgtgggatatataactcacccttgcacacaa 10074154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16107724 - 16107673
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||||| ||||||||||||  |||||||||||| |||| ||||||    
T  16107724 aacctttacttttttatccgatgtgacacatataactcacacttgtacacaa 16107673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 962644 - 962593
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||||||||||||||||||   |||||||||||| |||||| ||||    
T  962644 aacctttacttttctatccgatgtgggacatataactcacacttgcatacaa 962593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 28531426 - 28531477
Alignment:
Q  1 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||| |||||||||||||||||   |||||||||||| |||||||||||    
T  28531426 aacctttgcttttctatccgatgtgggacatataactcacacttgcacacaa 28531477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 30313217 - 30313173
Alignment:
Q  8 acttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    |||||||||||||||||||  |||||||| ||| |||||||||||    
T  30313217 acttttctatccgatgtgagacatataacacacgcttgcacacaa 30313173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 33561570 - 33561614
Alignment:
Q  8 acttttctatccgatgtgaagcatataactcacccttgcacacaa 52  Q
    ||||||||||| |||||| | |||||||||||| |||||||||||    
T  33561570 acttttctatctgatgtggaacatataactcacacttgcacacaa 33561614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University