View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11773_low_18 (Length: 253)

Name: NF11773_low_18
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11773_low_18
NF11773_low_18
[»] chr1 (4 HSPs)
chr1 (27-253)||(39897934-39898155)
chr1 (32-230)||(39874817-39875014)
chr1 (30-175)||(39882933-39883082)
chr1 (201-239)||(39883096-39883134)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 253
Target Start/End: Original strand, 39897934 - 39898155
Alignment:
Q  27 aaagaaacaagatgtgatgatagaatcttactagcagatacgatagactgatcgtgaggatccacacttggttgttttctgaagtcaatgcaagtttaac 126  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  39897934 aaagaaacaagatgtgatgatagaatcttactagcagatatgatagactgatcgtc-ggatccacacttggttgttttctgaagtcaatgcaagtttaac 39898032  T
Q  127 aaatttgcagttctaatagaataattatttcttctaggaatttcattttattagtataatcttatgcttatatatattactcactgaatgagcttaactt 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||    
T  39898033 aaatttgcagttctaatagaataattatttcttctaggaatttcattttattagtataatcttatgct----tatattactcactgaatgagcttaactt 39898128  T
Q  227 tttcaatcgtatagtgctaattcctgt 253  Q
    |||||||||||||||||||||||||||    
T  39898129 tttcaatcgtatagtgctaattcctgt 39898155  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 39874817 - 39875014
Alignment:
Q  32 aacaagatgtgatgatagaatcttactagcagatacgatagactgatcgtgaggatccacacttggttgttttctgaagtcaatgcaagtttaacaaatt 131  Q
    ||||| ||||||||||||||||||||||||||| |   || ||||||| ||||||||||||||||||||||||||||| |||  |||||||||||||| |    
T  39874817 aacaatatgtgatgatagaatcttactagcagaaa---taaactgatcatgaggatccacacttggttgttttctgaattcagcgcaagtttaacaaa-t 39874912  T
Q  132 tgc---agttctaatagaa----taattatttcttctaggaatttcattttattagtataatcttatgcttatatatattactcactgaatgagcttaac 224  Q
    |||   |||||| ||| ||    |||| |||||||||||||||||||||||||||||||| | |||||    | ||||||||||||||||||| ||||||    
T  39874913 tgcacaagttcttatacaataactaatgatttcttctaggaatttcattttattagtatattattatg----tttatattactcactgaatgaacttaac 39875008  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 39882933 - 39883082
Alignment:
Q  30 gaaacaagatgtgatgatagaatcttactagcagatacgatagactgatcgtgaggatccacacttggttgttttctgaagtcaatgcaagtttaacaaa 129  Q
    ||||||||||||||||||||||||||||||||||| |   ||| | |||| | ||||||||||||||||||||||||||| |||  || |||||||||||    
T  39882933 gaaacaagatgtgatgatagaatcttactagcagaaattgtagccggatcataaggatccacacttggttgttttctgaattcagcgcgagtttaacaaa 39883032  T
Q  130 tttgc---agttctaatagaataat-tatttcttctaggaatttcatttt 175  Q
    |||||   |||||||||||||||||  | |||||||||||||||||||||    
T  39883033 tttgcacaagttctaatagaataatgaaattcttctaggaatttcatttt 39883082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 39883096 - 39883134
Alignment:
Q  201 tattactcactgaatgagcttaactttttcaatcgtata 239  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  39883096 tattactcactgaatgagcttaactttttcaattgtata 39883134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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