View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11773_low_2 (Length: 556)
Name: NF11773_low_2
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11773_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 96 - 538
Target Start/End: Original strand, 39891240 - 39891682
Alignment:
| Q |
96 |
cttttatgagctcctttcttctgaaggtttagaacctttacagcaacaacgctttcttctgaattaagtattcctttgtacacaaaacctgtacctccag |
195 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| | |
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| T |
39891240 |
cttttatgagctcctttcttctgaaggtttagaacctttacagcaacaactctttcttctgaattaagtcttcctttgtacacaaaacctatacctccgg |
39891339 |
T |
|
| Q |
196 |
ttcctatcaagttctgaaccgagaacccatcacttgcatggtctagttcttggtatgatacctttagaagttgctcaattgttgaatcattggatgcttt |
295 |
Q |
| |
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||||||||||||||||| ||||||||||||| | ||||||| ||| ||||||||||||||||| ||| |||| |||||||||||||| |||| ||| |
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| T |
39891340 |
ttcctatcaagttctgatccgagaacccatctgtggcatggtgtagctcttggtatgataccttcggaaattgcacaattgttgaatcagcagatgtttt |
39891439 |
T |
|
| Q |
296 |
tctctgccttttcttcattttctggtagatgatgataataaggataaatgacaatagaaaaagaaatgcaattgagaagatgatgacgatgatcaacttg |
395 |
Q |
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||||||||||||| ||||| |||| |||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
39891440 |
tctctgccttttcctcattatctgatagatgatgatagtaaggacaaatgacaatagaagcagaaatgcaattgagaagatgatgatgatgatcaacttg |
39891539 |
T |
|
| Q |
396 |
cggcgaatatggtgttttctcttttttacatcttttggtgggcaaactttcagtttcagttttgctaccccaccgcaaagcctgtcattgccagtcaata |
495 |
Q |
| |
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|| ||||||||||||||||||||||| |||| ||||||| |||||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
39891540 |
cgacgaatatggtgttttctctttttcacattttttggtaggcaaattttcagattcagttctgctaccccgccgcaaagcctgtcattgccagtcaatg |
39891639 |
T |
|
| Q |
496 |
aaactctactggcattctgaaaaacgccaagcatgggcacctc |
538 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
39891640 |
aaactctactggcattctggaaaacaccaagcatgggcacctc |
39891682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 96 - 538
Target Start/End: Original strand, 39876163 - 39876599
Alignment:
| Q |
96 |
cttttatgagctcctttcttctgaaggtttagaacctttacagcaacaacgctttcttctgaattaagtattcctttgtacacaaaacctgtacctccag |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39876163 |
cttttatgagctcctttcttctgaaggtttagaacctttacagcaacaactctttcttctgaattaagtcttcctttgtacacaaaacctgtacctccag |
39876262 |
T |
|
| Q |
196 |
ttcctatcaagttctgaaccgagaacccatcacttgcatggtctagttcttggtatgatacctttagaagttgctcaattgttgaatcattggatgcttt |
295 |
Q |
| |
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|||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
39876263 |
ttcctatcaagttctgaaccgagaacccgtcagttgcatggtgtagttcttggtatgatacctttggaagttgctcaattgttgaatcggtggatgcttt |
39876362 |
T |
|
| Q |
296 |
tctctgccttttcttcattttctggtagatgatgataataaggataaatgacaatagaaaaagaaatgcaattgagaagatgatgacgatgatcaacttg |
395 |
Q |
| |
|
||||||||||||| ||||| |||| |||||||||||| || || |||||||| ||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
39876363 |
tctctgccttttcctcattatctgatagatgatgatagtagcgacaaatgacactagaagaagaaatgcaattgagaagat------gatgatcaacttg |
39876456 |
T |
|
| Q |
396 |
cggcgaatatggtgttttctcttttttacatcttttggtgggcaaactttcagtttcagttttgctaccccaccgcaaagcctgtcattgccagtcaata |
495 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |||||| ||||||| || ||| ||||||||||||||||| || |||||||||| ||||||||||||| |
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| T |
39876457 |
cggcgaatatggtgctttctctttttcacattttttggagggcaaagttgcagattcagttttgctaccccgccacaaagcctgttattgccagtcaatg |
39876556 |
T |
|
| Q |
496 |
aaactctactggcattctgaaaaacgccaagcatgggcacctc |
538 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||| ||||| |
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|
| T |
39876557 |
aaactctactagcattctggaagacgccaagcatggggacctc |
39876599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 281 - 538
Target Start/End: Original strand, 39899129 - 39899386
Alignment:
| Q |
281 |
atcattggatgcttttctctgccttttcttcattttctggtagatgatgataataaggataaatgacaatagaaaaagaaatgcaattgagaagatgatg |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39899129 |
atcattggatgcttttctctgccttttcttcattttctggtagatgatgataataaggataaatgacaatagaaaaagaaatgcaattgagaagatgatg |
39899228 |
T |
|
| Q |
381 |
acgatgatcaacttgcggcgaatatggtgttttctcttttttacatcttttggtgggcaaactttcagtttcagttttgctaccccaccgcaaagcctgt |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39899229 |
acgatgatcaacttgcggcgaatatggtgttttctcttttttacatcttttggtgggcaaactttcagtttcagttttgctaccccaccgcaaagcctgt |
39899328 |
T |
|
| Q |
481 |
cattgccagtcaataaaactctactggcattctgaaaaacgccaagcatgggcacctc |
538 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39899329 |
cattgccagtcaataaaactctactggcattctgaaaaacgccaagcatgggcacctc |
39899386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 96 - 538
Target Start/End: Original strand, 39884286 - 39884731
Alignment:
| Q |
96 |
cttttatgagctcctttcttctgaaggtttagaacctttacagcaacaacgctttcttctgaattaagtattcctttgtacacaaaacctgtacctccag |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| | |
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| T |
39884286 |
cttttatgagctcctttcttctgaaggtttagaacctttacagcaacaactctttcttctgaattaagtcttcctttgtacacaaaacctatacctccgg |
39884385 |
T |
|
| Q |
196 |
ttcctatcaagttctgaaccgagaacccatcacttgcatggtctagttcttggtatgatacctttagaagttgctcaattgttgaatcattggatgcttt |
295 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | ||||||| || ||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
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|
| T |
39884386 |
ttcctatcaagttctgaaccgaaaacccatttgtggcatggtgtaactcttggtatgataccttcggaaattgctcaattgttgaatcagtggatgcttt |
39884485 |
T |
|
| Q |
296 |
tctctgccttttcttcattttctggtagatgatgataataaggataaatgacaatagaaaaagaaatgcaattgagaa---gatgatgacgatgatcaac |
392 |
Q |
| |
|
||||||||||||| ||||| |||| |||||||||||| |||||| || ||||||||||| || ||||||||||||||| |||||||| ||||||||| |
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|
| T |
39884486 |
tctctgccttttcctcattatctgatagatgatgatagtaaggacaagtgacaatagaagaataaatgcaattgagaagatgatgatgatgatgatcaat |
39884585 |
T |
|
| Q |
393 |
ttgcggcgaatatggtgttttctcttttttacatcttttggtgggcaaactttcagtttcagttttgctaccccaccgcaaagcctgtcattgccagtca |
492 |
Q |
| |
|
||||||| || |||||||||||||||||| | | ||| ||||||||| | || |||| |||||||||||| ||||||||||||||||||||||||| |
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|
| T |
39884586 |
ttgcggccaacatggtgttttctctttttcaaacttttgggtgggcaacgctgtagattcaattttgctaccccgccgcaaagcctgtcattgccagtca |
39884685 |
T |
|
| Q |
493 |
ataaaactctactggcattctgaaaaacgccaagcatgggcacctc |
538 |
Q |
| |
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|| |||||||| | ||||| || ||||||||| ||||||| ||||| |
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|
| T |
39884686 |
atgaaactctattagcattttggaaaacgccatgcatgggaacctc |
39884731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 39898975 - 39899130
Alignment:
| Q |
96 |
cttttatgagctcctttcttctgaaggtttagaacctttacagcaacaacgctttcttctgaattaagtattcctttgtacacaaaacctgtacctccag |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39898975 |
cttttatgagctcctttcttctgaaggtttagaacctttacagcaacaactctttcttctgaattaagtattcctttgtacacaaaacctgtacctccag |
39899074 |
T |
|
| Q |
196 |
ttcctatcaagttctgaaccgagaacccatcacttgcatggtctagttcttggtat |
251 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
39899075 |
ttcctctcaagttctgaaccgagaacccatcagttgcatggtgtagttcttggtat |
39899130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 39898135 - 39898218
Alignment:
| Q |
1 |
tcgtatagcgctaattcctgtcatggtaaatggcat---------agtcagcatgtatctatgagctgtaactgaaataacatt |
75 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
39898135 |
tcgtatagtgctaattcctgtcatggtaaatggcatgaaatatgtagtcagcatgtatctatgagctgtaactaaaataacatt |
39898218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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