View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11773_low_20 (Length: 240)
Name: NF11773_low_20
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11773_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 45236350 - 45236562
Alignment:
| Q |
14 |
agaactccgtcaaacacgccaccggcgttgaagtaaggatatttgatgcggtgaagaaagtggctgatgaagctggacccattgatgtgttgttgttgaa |
113 |
Q |
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| T |
45236350 |
agaactccgtcaaacacgccaccggcgttgaagtaaggatatttgatgcggtgaagaaagtggctgatgaagctggacccattgatgtgttgttgttgaa |
45236449 |
T |
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| Q |
114 |
tcatggagtgttttatgcgttggaattgagtgatgtcaagtttacgattgatgttaatttgatgggttgtttgaatatgattaaagctgctttgcctcat |
213 |
Q |
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| T |
45236450 |
tcatggagtgttttatgcgttggaattgagtgatgtcaagtttacgattgatgttaatttgatgggttgtttgaatatgattaaagctgctttgcctcat |
45236549 |
T |
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| Q |
214 |
atgaagaagaata |
226 |
Q |
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| T |
45236550 |
atgaagaagaata |
45236562 |
T |
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Back To:
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Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 57 - 221
Target Start/End: Original strand, 7824867 - 7825046
Alignment:
| Q |
57 |
tgatgcggtgaagaaagtggctgatgaagctggacccattgatgtgttgttgttgaatcatggagtgttttatgcgttgga---------------attg |
141 |
Q |
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| T |
7824867 |
tgatgctgtgaagaaagcggttgatgaagctggacccattgatgtgttgttgttgaatcatggtgtgttttatgcgttggaattggagaaaatggaattg |
7824966 |
T |
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| Q |
142 |
agtgatgtcaagtttacgattgatgttaatttgatgggttgtttgaatatgattaaagctgctttgcctcatatgaagaa |
221 |
Q |
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| T |
7824967 |
agtgatgtgaagtttacgattgatgttaacttgatgggttgtttgaatatgattaaagctgctttgccgcaaatgaagaa |
7825046 |
T |
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