View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11773_low_5 (Length: 443)
Name: NF11773_low_5
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11773_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 1040506 - 1040207
Alignment:
| Q |
1 |
tgaagtagaaaccaaaaatggtagtagtgttgatgatgctaagcatgaagaagataaccgacatgatcctactcaaaatttaattgaattagaaactaaa |
100 |
Q |
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| T |
1040506 |
tgaagtagaaaccaaaaatggtagtagtgttgatgatgctaagcatgaagaagataaccgacatgatcctactcaaaatttaattgaattagaaactaaa |
1040407 |
T |
|
| Q |
101 |
aaatgtagcagtgttgaagaaaacaatcaacatgatcatgatcatgatcaaaatgtaattgaggataagaatctatttgatgtgaatgaggaaagaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1040406 |
aaatgtagcagtgttgaagaaaacaatcaacatgatcatgatcatgatcaaaatgtaattgaggataagaatctatttgatgtgaatgaggaaagaagaa |
1040307 |
T |
|
| Q |
201 |
ggaacaaatatgctgctgctgctgttctacaagctttggaattagcatcttttgagataagtaaatactcaaatcataagcaaaaggatgtagtaattcc |
300 |
Q |
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| T |
1040306 |
ggaacaaatatgctgctgctgctgttctacaagctttggaattagcatcttttgagataagtaaatactcaaatcataagcaaaaggatgtagtaattcc |
1040207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 359 - 428
Target Start/End: Complemental strand, 1040148 - 1040079
Alignment:
| Q |
359 |
cattatgcatggaaggaagagtcacaattaagtcaaaatctaaaggatgatatgataacactagagagtg |
428 |
Q |
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| T |
1040148 |
cattatgcatggaaggaagagtcacaattaagtcaaaatctaaaggatgatatgataacactagagagtg |
1040079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 297
Target Start/End: Complemental strand, 14685437 - 14685403
Alignment:
| Q |
263 |
aaatactcaaatcataagcaaaaggatgtagtaat |
297 |
Q |
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| T |
14685437 |
aaatactcaaatcataaacaaaaggatgtagtaat |
14685403 |
T |
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