View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11773_low_8 (Length: 442)
Name: NF11773_low_8
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11773_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Complemental strand, 10341975 - 10341584
Alignment:
| Q |
15 |
aataacaagattgaatcttagaaatacttcgacataaggtacagtggtggagatgggaaaattaaatttggtttaatattcaaatttctaactaaacaat |
114 |
Q |
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| T |
10341975 |
aataacaagattgaatcttagaaatacttcgacacaagatacagtggtggagatgggaaaattaaatttggtttaatattcaaatttctaactaaacaat |
10341876 |
T |
|
| Q |
115 |
ggaaatgagtttgatgtagcttagaaatattgcttcgagatgtaggcattgtgataatcttacttttattatcatataagaatttagaagttttggcgag |
214 |
Q |
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| T |
10341875 |
ggaaatgagtttgatgtagcttagaaatattgcttcgagatgtaggcattgtgataatcttacttttattatcatataagaatttagaagttttggcgag |
10341776 |
T |
|
| Q |
215 |
ttcggtttcagaagctcaacagtgtcagggtagacatgagatgagttgcagacaaatcttcgttaaactttcataacactatgcttcaaaatattcacat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10341775 |
ttcggtttcagaagctcaacagtgtcagggtagacataagatgagttgcagacaaatcttcgttaaactttcat--------------aaatattcacat |
10341690 |
T |
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| Q |
315 |
atgttgttgagatcggaaatgtctctataactatactaccaaggttgaactattgctagcagcctagtataatggaaggcaatagtgtcatttttgttgt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10341689 |
atgttgttgagatcggaaatgtctctataactatactaccaaggttgaactattgctagcagcctagtataatggaaggcaatagtgtcatttttgttgt |
10341590 |
T |
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