View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11773_low_9 (Length: 429)
Name: NF11773_low_9
Description: NF11773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11773_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 229 - 413
Target Start/End: Original strand, 49532697 - 49532881
Alignment:
| Q |
229 |
cgtacgtatacagcaaagtgtgttcttcagaggtgaaatgaggctcaggaaagccttctagaatgttctggagcttcttgattcccttctgcataatact |
328 |
Q |
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| T |
49532697 |
cgtacgtatacagcaaagtgtgttcttcagaggtgaaatgaggctcaggaaagccttctagaatgttctggagcttcttgattcccttctgcataatact |
49532796 |
T |
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| Q |
329 |
ccatccttgttcaaagttgataatgtttgacattttgacgaattgggaaaaataccaccaaaatctgctgcaatcgaaagaaatt |
413 |
Q |
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| T |
49532797 |
ccatccttgttcaaagttgataatgtttgacattttgacgaattgggaaaaataccaccaaaatctgctgcaatcgaaagaaatt |
49532881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 49532483 - 49532635
Alignment:
| Q |
15 |
attcagtgttgtttgtactcaccgtcgaaacgatgtaatcttgaaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttg |
114 |
Q |
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| T |
49532483 |
attcagtgttgtttgtactcactgtcgaaacgatgtaatcttgaaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttg |
49532582 |
T |
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| Q |
115 |
agtacacatattgtaaacggtcctgcattgcaattttaaaatcaattaaaccc |
167 |
Q |
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| T |
49532583 |
agtacacatattgtaaacggtcctgcattgcaattttaaaatcaattaaaccc |
49532635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 49478561 - 49478659
Alignment:
| Q |
31 |
actcaccgtcgaaacgatgtaatcttgaaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttgagtacacatattgta |
129 |
Q |
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| T |
49478561 |
actcaccgttgacacgatgtactcttcgaacgcttccttgtacttgtcatacaatggctgagaatagtcattaggaggcttttgagtacacatattgta |
49478659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 49703168 - 49703260
Alignment:
| Q |
58 |
aaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttgagtacacatattgtaaacggtcctgcattgcaattt |
150 |
Q |
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| T |
49703168 |
aaatgtttccttgtacttttcatacaattgttcggaatattcatgaggaggcttttgagtacacataacgtaaatggtcctgcattacaattt |
49703260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 378
Target Start/End: Original strand, 49522388 - 49522505
Alignment:
| Q |
261 |
gtgaaatgaggctcaggaaagccttctagaatgttctggagcttcttgattcccttctgcataatactccatccttgttcaaagttgataatgtttgaca |
360 |
Q |
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| T |
49522388 |
gtgaactgagtctcatgaaagccttctagattattcttgagtttcttgataccttgctggataaaaccccatccttcttcaaagttgataatctttgaca |
49522487 |
T |
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| Q |
361 |
ttttgacgaattgggaaa |
378 |
Q |
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| T |
49522488 |
tgttggtgaattgagaaa |
49522505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 49486188 - 49486292
Alignment:
| Q |
46 |
gatgtaatcttgaaatgtttccttatacttttcatacagtggctgagaatagtcatgaggcggcttttgagtacacatattgtaaacggtcctgcattgc |
145 |
Q |
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| T |
49486188 |
gatgtactcttcaaatgtttccttgtacttttcatacaattgttcggaatattcatgaggaggcctttgagtgcacatagtgtagatggtcctgtattgc |
49486287 |
T |
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| Q |
146 |
aattt |
150 |
Q |
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| T |
49486288 |
aattt |
49486292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 49486668 - 49486708
Alignment:
| Q |
255 |
tcagaggtgaaatgaggctcaggaaagccttctagaatgtt |
295 |
Q |
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| T |
49486668 |
tcagaggtgaattgaggctccggcaagccttctagaatgtt |
49486708 |
T |
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