View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11774_low_1 (Length: 564)

Name: NF11774_low_1
Description: NF11774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11774_low_1
NF11774_low_1
[»] chr3 (2 HSPs)
chr3 (310-548)||(11529723-11529961)
chr3 (240-310)||(21530220-21530290)
[»] chr2 (7 HSPs)
chr2 (312-548)||(20491893-20492129)
chr2 (366-544)||(1354211-1354389)
chr2 (366-544)||(1361097-1361275)
chr2 (227-309)||(40070674-40070756)
chr2 (246-308)||(30934587-30934649)
chr2 (235-309)||(28574778-28574852)
chr2 (238-310)||(6661146-6661218)
[»] chr5 (11 HSPs)
chr5 (158-308)||(23737554-23737703)
chr5 (158-243)||(19209410-19209495)
chr5 (179-274)||(19906390-19906485)
chr5 (15-88)||(19209274-19209347)
chr5 (15-88)||(23737766-23737839)
chr5 (226-309)||(22129034-22129117)
chr5 (15-88)||(41958750-41958823)
chr5 (249-309)||(34369715-34369775)
chr5 (226-309)||(5023610-5023693)
chr5 (263-309)||(19209487-19209533)
chr5 (240-309)||(34607341-34607410)
[»] chr6 (4 HSPs)
chr6 (310-544)||(14588185-14588419)
chr6 (310-544)||(14621843-14622077)
chr6 (479-544)||(12845719-12845784)
chr6 (237-306)||(19830985-19831054)
[»] chr4 (7 HSPs)
chr4 (328-548)||(29953758-29953978)
chr4 (310-544)||(51370457-51370691)
chr4 (179-286)||(53177489-53177595)
chr4 (226-309)||(7622189-7622272)
chr4 (246-309)||(7777564-7777627)
chr4 (246-309)||(7792356-7792419)
chr4 (240-309)||(34742410-34742479)
[»] scaffold0179 (2 HSPs)
scaffold0179 (208-280)||(23791-23863)
scaffold0179 (208-286)||(11246-11324)
[»] chr8 (3 HSPs)
chr8 (226-312)||(28952138-28952224)
chr8 (202-270)||(17000441-17000509)
chr8 (15-88)||(43915985-43916058)
[»] chr7 (2 HSPs)
chr7 (15-88)||(44660203-44660276)
chr7 (237-309)||(22691036-22691108)
[»] chr1 (2 HSPs)
chr1 (234-309)||(9469462-9469537)
chr1 (247-310)||(22590390-22590453)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 310 - 548
Target Start/End: Complemental strand, 11529961 - 11529723
Alignment:
Q  310 acttaaggtaaccagtcttgtttaatggaacattttgagtgctctctgcaccttgtagttgttctatgtggggtaagggtaattttaccaaattgataaa 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  11529961 acttaaggtaaccagtcttgtttaatggaacattttgagtgctctctgcaccttctagttgttctatgtggggtaagggtaattttaccaaattgatgaa 11529862  T
Q  410 tggctgaatcgttttgggtgtattgggaatttgataaatgtttttaggagaggttattaaggtgacagtgtgacccttttgagcaagaattttggccaat 509  Q
    ||||||||| | ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11529861 tggctgaattgcttttggtgttttgggaatttgatcaatgtttttaggagaggttattaaggtgacagtgtgacccttttgagcaagaattttggccaat 11529762  T
Q  510 tcaaaataagggtatatgtgtcccatagctagccaaggg 548  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11529761 tcaaaataagggtatatgtgtcccatagctagccaaggg 11529723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 21530290 - 21530220
Alignment:
Q  240 cctgacaaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtga 310  Q
    |||| |||||||| ||||||||  ||||||||||||| ||  ||||||| ||||| |||||||||||||||    
T  21530290 cctggcaaatttgccaggagttgatgctcctggcataatttcctggcaaaatgcaggatttcttgtagtga 21530220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 312 - 548
Target Start/End: Complemental strand, 20492129 - 20491893
Alignment:
Q  312 ttaaggtaaccagtcttgtttaatggaacattttgagtgctctctgcaccttgtagttgttctatgtggggtaagggtaattttaccaaattgataaatg 411  Q
    ||||||| |||| |||||| ||||||||| ||  ||||||||||| |||| ||||||||||||||||  ||||| ||| |||||||||||||||| ||||    
T  20492129 ttaaggtgaccattcttgtctaatggaaccttaagagtgctctcttcaccatgtagttgttctatgtatggtaaaggtgattttaccaaattgatgaatg 20492030  T
Q  412 gctgaatcgttttgggtgtattgggaatttgataaatgtttttaggagaggttattaaggtgacagtgtgacccttttgagcaagaattttggccaattc 511  Q
    | ||||| | ||||||||  ||||| ||||||| ||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||| || || ||    
T  20492029 gttgaattgctttgggtgctttgggcatttgatcaatgtttttgggggagtttatgaaggtgacagtgtgacccttttgagcaagaatttttgctaactc 20491930  T
Q  512 aaaataagggtatatgtgtcccatagctagccaaggg 548  Q
     ||||||||||| ||||||||||||||||||||||||    
T  20491929 gaaataagggtacatgtgtcccatagctagccaaggg 20491893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 366 - 544
Target Start/End: Complemental strand, 1354389 - 1354211
Alignment:
Q  366 agttgttctatgtggggtaagggtaattttaccaaattgataaatggctgaatcgttttgggtgtattgggaatttgataaatgtttttaggagaggtta 465  Q
    ||||| |||||||| ||||| || ||| ||||||| ||||| ||||| | ||| ||||||||||| || || ||||| | |||||||||||| ||| | |    
T  1354389 agttgctctatgtgtggtaaaggcaatcttaccaatttgatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttga 1354290  T
Q  466 ttaaggtgacagtgtgacccttttgagcaagaattttggccaattcaaaataagggtatatgtgtcccatagctagcca 544  Q
    | |||||||||||||||||||||  ||| ||||||||||| | |||||| ||||||||||| |||||||||||||||||    
T  1354289 tgaaggtgacagtgtgaccctttgaagctagaattttggctacttcaaagtaagggtatatatgtcccatagctagcca 1354211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 366 - 544
Target Start/End: Complemental strand, 1361275 - 1361097
Alignment:
Q  366 agttgttctatgtggggtaagggtaattttaccaaattgataaatggctgaatcgttttgggtgtattgggaatttgataaatgtttttaggagaggtta 465  Q
    ||||| |||||||| ||||| || ||| ||||||| || || ||||| | ||| ||||||||||| || || ||||| | |||||||||||| ||| | |    
T  1361275 agttgctctatgtgtggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttga 1361176  T
Q  466 ttaaggtgacagtgtgacccttttgagcaagaattttggccaattcaaaataagggtatatgtgtcccatagctagcca 544  Q
    | |||||||||||||||||||||  ||| ||||||||||| | |||||| ||||||||||||||||||||||| |||||    
T  1361175 tgaaggtgacagtgtgaccctttgaagctagaattttggctacttcaaagtaagggtatatgtgtcccatagccagcca 1361097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 40070674 - 40070756
Alignment:
Q  227 ccctgacattgctcctgacaaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtg 309  Q
    ||||||||| ||| ||| | |||||  ||||||||||||||||||||||  ||| ||||| |||||||| |||||||||||||    
T  40070674 ccctgacatagcttctgccgaattttccaggagttcttgctcctggcattattccctggccatatgcaacatttcttgtagtg 40070756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 30934649 - 30934587
Alignment:
Q  246 aaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagt 308  Q
    |||||||  |||||||||||||||||||||  ||| |||||||||||||| ||||||| ||||    
T  30934649 aaatttgctaggagttcttgctcctggcattattccctggcaatatgcaacatttcttatagt 30934587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 28574852 - 28574778
Alignment:
Q  235 ttgctcctgacaaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtg 309  Q
    |||| |||| |||||||| ||||||||||||||||| ||||  ||   || |||||||||| |||||||||||||    
T  28574852 ttgcccctggcaaatttgccaggagttcttgctcctagcattatttcatgacaatatgcaacatttcttgtagtg 28574778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 6661146 - 6661218
Alignment:
Q  238 ctcctgacaaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtga 310  Q
    |||||| |||||||  |||| |||| ||||||||||||| ||| ||||| |  |||| |||||||||||||||    
T  6661146 ctcctggcaaatttcccaggggttcatgctcctggcataattccctggctaattgcaggatttcttgtagtga 6661218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 158 - 308
Target Start/End: Complemental strand, 23737703 - 23737554
Alignment:
Q  158 ttgggaatactcatattaaagtatgagaatcgggtcccaccttttctaaagtcattttgccaggggcatccctgacattgctcctgacaaatttgtcagg 257  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||    
T  23737703 ttgggaatactcaaattaaagtatgagaatcgggtcccaccttttctaaagtcattttgccaggg-catccctggcattgctcctggcaaatttgccagg 23737605  T
Q  258 agttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagt 308  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  23737604 agttcttgctcctggcattgttccctggcaatatgcaagatttcttgtagt 23737554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 19209410 - 19209495
Alignment:
Q  158 ttgggaatactcatattaaagtatgagaatcgggtcccaccttttctaaagtcattttgccaggggcatccctgacattgctcctg 243  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19209410 ttgggaatacttatattaaagtatgagaatcgggtcccaccttttctaaagtcattttgccaggggcatccctggcattgctcctg 19209495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 19906485 - 19906390
Alignment:
Q  179 tatgagaatcgggtcccaccttttctaaagtcattttgccaggggcatccctgacattgctcctgacaaatttgtcaggagttcttgctcctggca 274  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||    
T  19906485 tatgagaattgggtcccatcttttctaaagtcattttgccaggggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctggca 19906390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 19209274 - 19209347
Alignment:
Q  15 gatggatggagaaggaggtgaaagtggtcgccgcggcggcggtgtggtgaatggagagcggtgcggtggtctgg 88  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  19209274 gatggatggagaaggaggtgatagtggtcgcggcggcggtggtgtggtgaatggagagcggtgcggtggtctgg 19209347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 23737839 - 23737766
Alignment:
Q  15 gatggatggagaaggaggtgaaagtggtcgccgcggcggcggtgtggtgaatggagagcggtgcggtggtctgg 88  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  23737839 gatggatggagaaggaggtgatagtggtcgcggcggcggtggtgtggtgaatggagagcggtgcggtggtctgg 23737766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 22129034 - 22129117
Alignment:
Q  226 tccctgacattgctcctgacaaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtg 309  Q
    |||||| ||| ||||||| |||||||| ||||||||||||||||||||||  ||| |||||||||| |||||||||||||||||    
T  22129034 tccctggcatggctcctggcaaatttgccaggagttcttgctcctggcattattccctggcaatatacaagatttcttgtagtg 22129117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 41958750 - 41958823
Alignment:
Q  15 gatggatggagaaggaggtgaaagtggtcgccgcggcggcggtgtggtgaatggagagcggtgcggtggtctgg 88  Q
    ||||||||||||||||||||| |||||| || ||||||| |||| ||||||||||||||||||  |||||||||    
T  41958750 gatggatggagaaggaggtgagagtggttgcggcggcggtggtgaggtgaatggagagcggtggtgtggtctgg 41958823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 34369775 - 34369715
Alignment:
Q  249 tttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtg 309  Q
    |||| |||||||||||||||||||||| |||| ||| |||||| |||||||||||||||||    
T  34369775 tttgccaggagttcttgctcctggcattgttccctgacaatatacaagatttcttgtagtg 34369715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 5023610 - 5023693
Alignment:
Q  226 tccctgacattgctcctgacaaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtg 309  Q
    |||||| ||| ||||||| |||||||  ||||||||||||||| ||||||  ||| ||| |||||| |||||||||||||||||    
T  5023610 tccctggcatggctcctggcaaattttccaggagttcttgctcttggcattattccctgacaatatacaagatttcttgtagtg 5023693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 19209487 - 19209533
Alignment:
Q  263 ttgctcctggcatagttctctggcaatatgcaagatttcttgtagtg 309  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  19209487 ttgctcctggcattgttccctggcaatatgcaagatttcttgtagtg 19209533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 309
Target Start/End: Complemental strand, 34607410 - 34607341
Alignment:
Q  240 cctgacaaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtg 309  Q
    |||| |||||||| | |||||| |||||||||||||  ||| || ||||||  |||||||||||||||||    
T  34607410 cctggcaaatttgcctggagtttttgctcctggcatttttccctagcaatacacaagatttcttgtagtg 34607341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 4e-58; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 310 - 544
Target Start/End: Complemental strand, 14588419 - 14588185
Alignment:
Q  310 acttaaggtaaccagtcttgtttaatggaacattttgagtgctctctgcaccttgtagttgttctatgtggggtaagggtaattttaccaaattgataaa 409  Q
    ||||||||||||||||   |||||| ||||||||||||||||| |||||||||||||||| ||||||||  ||||| ||| |||||||||| ||||| ||    
T  14588419 acttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtagttcttctatgtatggtaaaggtgattttaccaacttgatgaa 14588320  T
Q  410 tggctgaatcgttttgggtgtattgggaatttgataaatgtttttaggagaggttattaaggtgacagtgtgacccttttgagcaagaattttggccaat 509  Q
    ||| ||||  ||||||||||| ||||| ||||||| |||||||||||| ||| |||| || |||||||||||||| |||||||||||||||||||| ||     
T  14588319 tggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaatgtgacagtgtgaccattttgagcaagaattttggctaac 14588220  T
Q  510 tcaaaataagggtatatgtgtcccatagctagcca 544  Q
    || ||| ||||   |||||||||||||||||||||    
T  14588219 tcgaaaaaaggtagtatgtgtcccatagctagcca 14588185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 310 - 544
Target Start/End: Complemental strand, 14622077 - 14621843
Alignment:
Q  310 acttaaggtaaccagtcttgtttaatggaacattttgagtgctctctgcaccttgtagttgttctatgtggggtaagggtaattttaccaaattgataaa 409  Q
    ||||||||||||||||   |||||| ||||||||||||||||| |||||||||||||||| ||||||||  ||||| ||| |||||||||| ||||| ||    
T  14622077 acttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcaccttgtagttcttctatgtatggtaaaggtgattttaccaacttgatgaa 14621978  T
Q  410 tggctgaatcgttttgggtgtattgggaatttgataaatgtttttaggagaggttattaaggtgacagtgtgacccttttgagcaagaattttggccaat 509  Q
    ||| ||||  ||||||||||| ||||| ||||||| |||||||||||| ||| |||| || |||||||||||||| |||||||||||||||||||| ||     
T  14621977 tggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatgaacgtgacagtgtgaccattttgagcaagaattttggctaac 14621878  T
Q  510 tcaaaataagggtatatgtgtcccatagctagcca 544  Q
    || ||| ||||   |||||||||||||||||||||    
T  14621877 tcgaaaaaaggtagtatgtgtcccatagctagcca 14621843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 479 - 544
Target Start/End: Complemental strand, 12845784 - 12845719
Alignment:
Q  479 gtgacccttttgagcaagaattttggccaattcaaaataagggtatatgtgtcccatagctagcca 544  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  12845784 gtgacccttttgagcaagaatcttggccaactcaaaataagggtatatgtgtcccatagctagcca 12845719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 19830985 - 19831054
Alignment:
Q  237 gctcctgacaaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgta 306  Q
    ||||||| |||||||  |||||||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  19830985 gctcctggcaaattttccaggagttcttgctcctggcattgttccctggcaatatgaaagatttcttgta 19831054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 6e-57; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 328 - 548
Target Start/End: Complemental strand, 29953978 - 29953758
Alignment:
Q  328 tgtttaatggaacattttgagtgctctctgcaccttgtagttgttctatgtggggtaagggtaattttaccaaattgataaatggctgaatcgttttggg 427  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||  ||||| ||| |||||||||||||||| ||||| ||||| ||||||||    
T  29953978 tgttaaatggaacattttgagtgctctctccaccttgtagttgttctatgtatggtaaaggtgattttaccaaattgatgaatggttgaattgttttggg 29953879  T
Q  428 tgtattgggaatttgataaatgtttttaggagaggttattaaggtgacagtgtgacccttttgagcaagaattttggccaattcaaaataagggtatatg 527  Q
    ||  || |||||||||| |||| ||   |||||| |||| || |||||||||||||  |||||||||||||| |||||||| || |||||||||||||||    
T  29953878 tggtttcggaatttgatcaatgattccgggagagcttataaatgtgacagtgtgacgattttgagcaagaatcttggccaactcgaaataagggtatatg 29953779  T
Q  528 tgtcccatagctagccaaggg 548  Q
    ||||||||||| || ||||||    
T  29953778 tgtcccatagcgagtcaaggg 29953758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 310 - 544
Target Start/End: Original strand, 51370457 - 51370691
Alignment:
Q  310 acttaaggtaaccagtcttgtttaatggaacattttgagtgctctctgcaccttgtagttgttctatgtggggtaagggtaattttaccaaattgataaa 409  Q
    ||||||| |||||| || |||||  ||||| ||| ||  |||||||| ||||||||||||||||||| || ||||| ||| |||| ||||||||||| ||    
T  51370457 acttaagataaccaatcatgttttttggaatattctgcatgctctcttcaccttgtagttgttctatatgtggtaaaggtgatttaaccaaattgatgaa 51370556  T
Q  410 tggctgaatcgttttgggtgtattgggaatttgataaatgtttttaggagaggttattaaggtgacagtgtgacccttttgagcaagaattttggccaat 509  Q
    ||| ||||| ||||||||||  || |||||||||| ||||||||| |||||| | || ||||||||||||||||| |||||||||||||||||||||||     
T  51370557 tggttgaattgttttgggtggtttaggaatttgatcaatgtttttgggagagttgataaaggtgacagtgtgaccattttgagcaagaattttggccaac 51370656  T
Q  510 tcaaaataagggtatatgtgtcccatagctagcca 544  Q
    ||||||||||||  || |||||||||||| |||||    
T  51370657 tcaaaataagggagtacgtgtcccatagcaagcca 51370691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 53177595 - 53177489
Alignment:
Q  179 tatgagaatcgggtcccaccttttctaaagtcattttgccaggggcatccctgacattgctcctgacaaatttgtcaggagttcttgctcctggcatagt 278  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||  |||||||| |  ||||||| |||||||| ||||||||||||||||    
T  53177595 tatgagaatcggg-cccactttttctaaagtaattttgccaggggcatctctggtattgctccaggtaaatttgccaggagttgttgctcctggcatagt 53177497  T
Q  279 tctctggc 286  Q
    | ||||||    
T  53177496 tttctggc 53177489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 7622272 - 7622189
Alignment:
Q  226 tccctgacattgctcctgacaaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtg 309  Q
    |||||| ||| ||||||| |||||||| |||||||| |||||||||||||  ||| |||||||||  |||||||||||||||||    
T  7622272 tccctggcatagctcctggcaaatttgccaggagtttttgctcctggcatttttccctggcaatacacaagatttcttgtagtg 7622189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 7777564 - 7777627
Alignment:
Q  246 aaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtg 309  Q
    ||||||| |||||||||||||||||||||||||||  |||| |  |||| ||||||||||||||    
T  7777564 aaatttgccaggagttcttgctcctggcatagttccttggctaattgcatgatttcttgtagtg 7777627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 7792356 - 7792419
Alignment:
Q  246 aaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtg 309  Q
    ||||||| ||||||||||||||||||||||||| | ||||| |  |||| ||||||||||||||    
T  7792356 aaatttgccaggagttcttgctcctggcatagtaccctggctaattgcatgatttcttgtagtg 7792419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 309
Target Start/End: Complemental strand, 34742479 - 34742410
Alignment:
Q  240 cctgacaaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtg 309  Q
    |||| |||||||| |||| |||  ||||||||||||| ||  ||||||| ||||| ||||||||||||||    
T  34742479 cctggcaaatttgccaggggttgatgctcctggcataatttcctggcaaaatgcaggatttcttgtagtg 34742410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 23791 - 23863
Alignment:
Q  208 gtcattttgccaggggcatccctgacattgctcctgacaaatttgtcaggagttcttgctcctggcatagttc 280  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||    
T  23791 gtcattttcccaggggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctggcatagttc 23863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 11324 - 11246
Alignment:
Q  208 gtcattttgccaggggcatccctgacattgctcctgacaaatttgtcaggagttcttgctcctggcatagttctctggc 286  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||| |||||    
T  11324 gtcattttcccaggggcatccctggcattgctcctggcaaatttgccaagagttcttgctcctggcatagttccctggc 11246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 28952224 - 28952138
Alignment:
Q  226 tccctgacattgctcctgacaaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtgact 312  Q
    |||||| ||| ||||||| |||||||| ||||||||||||||||||||||  ||| |||||||||| ||||||||||||||||||||    
T  28952224 tccctggcatggctcctggcaaatttgccaggagttcttgctcctggcattattccctggcaatatacaagatttcttgtagtgact 28952138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 17000509 - 17000441
Alignment:
Q  202 tctaaagtcattttgccaggggcatccctgacattgctcctgacaaatttgtcaggagttcttgctcct 270  Q
    |||||||||||||||| ||||||||||||| |||||||||||  |||||||| ||||||||||||||||    
T  17000509 tctaaagtcattttgcgaggggcatccctggcattgctcctggtaaatttgttaggagttcttgctcct 17000441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 43916058 - 43915985
Alignment:
Q  15 gatggatggagaaggaggtgaaagtggtcgccgcggcggcggtgtggtgaatggagagcggtgcggtggtctgg 88  Q
    ||||||||||||||||  ||| ||||||||| |||| || |||||||||||||||||||||| |||||||||||    
T  43916058 gatggatggagaaggaaatgagagtggtcgcggcggtggtggtgtggtgaatggagagcggtacggtggtctgg 43915985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 44660276 - 44660203
Alignment:
Q  15 gatggatggagaaggaggtgaaagtggtcgccgcggcggcggtgtggtgaatggagagcggtgcggtggtctgg 88  Q
    ||||||||||||||||||||| |||||| || ||||| | |||||||||||||||||||||||  |||||||||    
T  44660276 gatggatggagaaggaggtgagagtggttgcggcggcagtggtgtggtgaatggagagcggtggtgtggtctgg 44660203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 22691036 - 22691108
Alignment:
Q  237 gctcctgacaaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtg 309  Q
    |||||||  ||||||| ||| ||||||||||||||||||  ||| |||||||||||||| |||||||||||||    
T  22691036 gctcctggaaaatttgacagcagttcttgctcctggcattattccctggcaatatgcaacatttcttgtagtg 22691108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 9469537 - 9469462
Alignment:
Q  234 attgctcctgacaaatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtg 309  Q
    |||||||||| |||||||| ||||||||| ||||||| ||||| |||  ||| || |||||| |||||||||||||    
T  9469537 attgctcctggcaaatttgccaggagttcatgctcctagcataattccgtggtaaaatgcaacatttcttgtagtg 9469462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 22590390 - 22590453
Alignment:
Q  247 aatttgtcaggagttcttgctcctggcatagttctctggcaatatgcaagatttcttgtagtga 310  Q
    |||||| ||||  ||||||||||||||||  ||  |||||||||||||| ||||||||||||||    
T  22590390 aatttgccagggattcttgctcctggcattatttcctggcaatatgcaatatttcttgtagtga 22590453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University