View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11774_low_5 (Length: 353)
Name: NF11774_low_5
Description: NF11774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11774_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 340
Target Start/End: Original strand, 16826783 - 16827088
Alignment:
| Q |
20 |
atgtcaactttagaaccttgcaaagtgcatggtccccattatcttggggtaaaagaactggttgtttgaattttagtattccatagatatggttttattg |
119 |
Q |
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| T |
16826783 |
atgtcaactttagaaccttgcaaagtgcatggtccccattatcttggg----------------tatgagttttagtattccatagatatggttttattg |
16826866 |
T |
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| Q |
120 |
ttaatcaacctatatatctatttctggaaggttcaaagagcataatttatagta-gctttggtaaaagaagttcatgagaaccacgtgtgtggttgtagt |
218 |
Q |
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| T |
16826867 |
ttaattaatctatatatctatttctggaaggttcaaagagcataatatatagtaagctttggtaaaagaagttcatgagaaccacgtgtgtggttgtcat |
16826966 |
T |
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| Q |
219 |
tttgatgatccattataaacaccctttcctcacaggcacatagataccataatatatagtgacatttcataatcatatataattagcaactgttaataat |
318 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16826967 |
tttgatgatccattatcaacaccctttcctcacaggcacatagataccataatatatagtgacatttcataatcatatataactagcaactgttaataat |
16827066 |
T |
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| Q |
319 |
ggattacaataaatcattgtct |
340 |
Q |
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|||||||||||||||||||||| |
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| T |
16827067 |
ggattacaataaatcattgtct |
16827088 |
T |
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