View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11774_low_7 (Length: 263)
Name: NF11774_low_7
Description: NF11774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11774_low_7 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 14541254 - 14541112
Alignment:
| Q |
18 |
agtattgtcataatatcagccaatttcattcttttaactaattgaggaagaatttgcaaattgataaaatcaggtggacgaa-tttccatctccaaggaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
14541254 |
agtattgtcataatatcagccaatttcattcttttaactaattgaggaagaatttgcaaattgataaaaccaggtggacgaattttccatctccaaggaa |
14541155 |
T |
|
| Q |
117 |
aaccattctgatctcctattagaaaaattcctaattccccctt |
159 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14541154 |
aaccattctgatctcctagtagaaaaattcctaattccccctt |
14541112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 504757 - 504615
Alignment:
| Q |
18 |
agtattgtcataatatcagccaatttcattcttttaactaattgaggaagaatttgcaaattgataaaatcaggtggacgaa-tttccatctccaaggaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
504757 |
agtattgtcataatatcagccaatttcattcttttaactaattgaggaagaatttgcaaattgataaaaccaggtggacgaattttccatctccaaggaa |
504658 |
T |
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| Q |
117 |
aaccattctgatctcctattagaaaaattcctaattccccctt |
159 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |
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| T |
504657 |
aaccattctgatctcctagtagaaaaattcctaattccccctt |
504615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 9734759 - 9734710
Alignment:
| Q |
195 |
acggtattgacttgtgatgtgactctaagaaatggttttcttcaaagttt |
244 |
Q |
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| T |
9734759 |
acggtattgacttgtgatgtgactctaagaaatgattttctttaaagttt |
9734710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 21459781 - 21459719
Alignment:
| Q |
40 |
atttcattcttttaactaattgaggaagaatttgcaaattgataaaatcaggtggacgaattt |
102 |
Q |
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| T |
21459781 |
atttcattcttttaactaattgaggaaaagtttgcaaattgataaaacaaaatggacgaattt |
21459719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 49763856 - 49763731
Alignment:
| Q |
35 |
agccaatttcattcttttaactaattgaggaagaatttgcaaattgataaaatcaggtggacgaa-tttccatctccaaggaaaaccattctgatctcct |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
49763856 |
agccaatttcattcttttaactaattgaggaagaatttgcaaattgataaaaccaggtggacgaattttccatctccaaggaaaatcattctgatctcct |
49763757 |
T |
|
| Q |
134 |
attagaaaaattcctaattccccctt |
159 |
Q |
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|||||||||||||||||||||||||| |
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| T |
49763756 |
attagaaaaattcctaattccccctt |
49763731 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 166415 - 166314
Alignment:
| Q |
18 |
agtattgtcataatatcagccaatttcattcttttaactaattgaggaagaatttgcaaattgataaaatcaggtggac-gaatttccatctccaaggaa |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| || |||||||||||| |||| |
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| T |
166415 |
agtattgtcataatatcagccaatttcattcttttaactaattgaggaagaatttgcaaattaataaaaccgggtggacggattttccatctccagggaa |
166316 |
T |
|
| Q |
117 |
aa |
118 |
Q |
| |
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|| |
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|
| T |
166315 |
aa |
166314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 8808 - 8746
Alignment:
| Q |
40 |
atttcattcttttaactaattgaggaagaatttgcaaattgataaaatcaggtggacgaattt |
102 |
Q |
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|
||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||||||| |
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| T |
8808 |
atttcattcttttaactaattgaggaaaagtttgcaaattgataaaacaaaatggacgaattt |
8746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 6928689 - 6928654
Alignment:
| Q |
18 |
agtattgtcataatatcagccaatttcattctttta |
53 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
6928689 |
agtattgtgataatatcagccaatttcattctttta |
6928654 |
T |
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