View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11774_low_9 (Length: 228)
Name: NF11774_low_9
Description: NF11774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11774_low_9 |
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| [»] chr5 (9 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 10867228 - 10867437
Alignment:
| Q |
19 |
tacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaa |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10867228 |
tacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaa |
10867327 |
T |
|
| Q |
119 |
ttggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtgaagaaagtgctgaagactagtgtggagtctttggttgag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10867328 |
ttggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagaggtggtgaagaaagtgctgaagactagtgtggagtctttggttgag |
10867427 |
T |
|
| Q |
219 |
cttaacatgc |
228 |
Q |
| |
|
|||||||||| |
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|
| T |
10867428 |
cttaacatgc |
10867437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 10873084 - 10872875
Alignment:
| Q |
19 |
tacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873084 |
tacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaa |
10872985 |
T |
|
| Q |
119 |
ttggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtgaagaaagtgctgaagactagtgtggagtctttggttgag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10872984 |
ctggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtgaagaaagtgctgaagactagtgtggagtctttggttgag |
10872885 |
T |
|
| Q |
219 |
cttaacatgc |
228 |
Q |
| |
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|||||||||| |
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| T |
10872884 |
cttaacatgc |
10872875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 10878155 - 10877946
Alignment:
| Q |
19 |
tacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878155 |
tacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaa |
10878056 |
T |
|
| Q |
119 |
ttggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtgaagaaagtgctgaagactagtgtggagtctttggttgag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878055 |
ctggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtgaagaaagtgctgaagactagtgtggagtctttggttgag |
10877956 |
T |
|
| Q |
219 |
cttaacatgc |
228 |
Q |
| |
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|||||||||| |
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| T |
10877955 |
cttaacatgc |
10877946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 10883226 - 10883017
Alignment:
| Q |
19 |
tacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10883226 |
tacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaa |
10883127 |
T |
|
| Q |
119 |
ttggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtgaagaaagtgctgaagactagtgtggagtctttggttgag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10883126 |
ctggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtgaagaaagtgctgaagactagtgtggagtctttggttgag |
10883027 |
T |
|
| Q |
219 |
cttaacatgc |
228 |
Q |
| |
|
|||||||||| |
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|
| T |
10883026 |
cttaacatgc |
10883017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 10887141 - 10886932
Alignment:
| Q |
19 |
tacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10887141 |
tacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaa |
10887042 |
T |
|
| Q |
119 |
ttggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtgaagaaagtgctgaagactagtgtggagtctttggttgag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10887041 |
ttggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagaggtggtgaagaaagtgctgaagactagtgtggagtctttggttgag |
10886942 |
T |
|
| Q |
219 |
cttaacatgc |
228 |
Q |
| |
|
|||||||||| |
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| T |
10886941 |
cttaacatgc |
10886932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 39676771 - 39676980
Alignment:
| Q |
19 |
tacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
39676771 |
tacaaaacgtacttgattttcttcaaactgattttcctgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcggtgaa |
39676870 |
T |
|
| Q |
119 |
ttggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtgaagaaagtgctgaagactagtgtggagtctttggttgag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
39676871 |
ttggattgaagggagagggaaatcagtggtttgtgaggctgtaattaaggaagaggtggtgaagaaagtgttgaagactagcgtggagtctttggttgag |
39676970 |
T |
|
| Q |
219 |
cttaacatgc |
228 |
Q |
| |
|
|||||||||| |
|
|
| T |
39676971 |
cttaacatgc |
39676980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 81 - 227
Target Start/End: Original strand, 10047038 - 10047184
Alignment:
| Q |
81 |
ggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtga |
180 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10047038 |
ggaaatttttgttcggataagaaagccgcggcggtgaattggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagaggtggtga |
10047137 |
T |
|
| Q |
181 |
agaaagtgctgaagactagtgtggagtctttggttgagcttaacatg |
227 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||| |
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|
| T |
10047138 |
agaaagtgttgaagattagtgtggagtctttggttgagcttaacatg |
10047184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 10046873 - 10046933
Alignment:
| Q |
19 |
tacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatatc |
79 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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|
| T |
10046873 |
tacaaaacgtacttgattttcttcaaagcgattttcctgatatggatgttattggtatatc |
10046933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 37950091 - 37950194
Alignment:
| Q |
81 |
ggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtga |
180 |
Q |
| |
|
||||||| ||||||||| |||||| |||| ||||| ||||||||||| || | ||||||||||| || ||||| || | || || ||||||||||||| |
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| T |
37950091 |
ggaaattattgttcggataagaaacctgccgcagttaattggattgagggacgcgggaaatcagttgtttgtgaagcaattatcaaagaagatgtggtga |
37950190 |
T |
|
| Q |
181 |
agaa |
184 |
Q |
| |
|
|||| |
|
|
| T |
37950191 |
agaa |
37950194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 81 - 228
Target Start/End: Complemental strand, 30708312 - 30708165
Alignment:
| Q |
81 |
ggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagtggtgtgtgaggctgtaattaaggaagatgtggtga |
180 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| || || |||||||||||| | || || || ||||||||||||||||| ||||||||||| || |||| |
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| T |
30708312 |
ggaaatttctgttccgacaagaaagcggcggctgtaaactggattgaagggcgtggtaagtctgtggtgtgtgaggctgttattaaggaagaggttgtga |
30708213 |
T |
|
| Q |
181 |
agaaagtgctgaagactagtgtggagtctttggttgagcttaacatgc |
228 |
Q |
| |
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|||||||| ||||||||||||||||| | |||||||||||||||||| |
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| T |
30708212 |
agaaagtgttgaagactagtgtggaggcactggttgagcttaacatgc |
30708165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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