View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11775_low_1 (Length: 459)
Name: NF11775_low_1
Description: NF11775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11775_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 9399575 - 9400001
Alignment:
| Q |
20 |
tcaaagggaatatttgttattcaaatccgtaccaattaagttttactgtggatcatataaaattgtgtgttcaatata-----cttcaatatattgttct |
114 |
Q |
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| T |
9399575 |
tcaaagggaatatttgttattcaaatccgtaccaattaagttttactgtggatcatataaaattgtgtgttcaatataatatacttcaatatattgttct |
9399674 |
T |
|
| Q |
115 |
tnnnnnnnnncttctagattttttagtaagaaaaaatccaaaacaaacgtttgagcattgat-tacgaattgtacataaaagaaagaagtagcgataaat |
213 |
Q |
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| T |
9399675 |
taaaaaaatacttctagattttttagtaagaaaaaatccaaaacaaacatttgagcattgatatacgacttgtacataaaagaaagaagtagagataaat |
9399774 |
T |
|
| Q |
214 |
ttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaagcaatatatcaagaaagtctctga |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9399775 |
ttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcggcacaatcaagcaatatatcaagaaagtctctga |
9399874 |
T |
|
| Q |
314 |
attcagcaccctgctcacccttattttccttccttcctttgttcttcctcaactcttctcttttactaataatcctttccaccaacgtatcaaacctcat |
413 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9399875 |
attcagcaccttgctcacccttattttctttccttcctttgttcttcctcaactcttctcttttactaataatcctttccaccaatgtatcaaacctcat |
9399974 |
T |
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| Q |
414 |
aaacaaatcctctatcctcttcccaaa |
440 |
Q |
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| T |
9399975 |
aaacaaatcctctatcctcttcccaaa |
9400001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 191 - 440
Target Start/End: Original strand, 9382283 - 9382532
Alignment:
| Q |
191 |
aaaagaaagaagtagcgataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaag |
290 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9382283 |
aaaagaaggaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaag |
9382382 |
T |
|
| Q |
291 |
caatatatcaagaaagtctctgaattcagcaccctgctcacccttattttccttccttcctttgttcttcctcaactcttctcttttactaataatcctt |
390 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
9382383 |
caatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttgttcttcctcaactcttctctcttagtaataatcctt |
9382482 |
T |
|
| Q |
391 |
tccaccaacgtatcaaacctcataaacaaatcctctatcctcttcccaaa |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9382483 |
tccaccaacgtatcaaacctcataaacaaatcctctatcctcttcccaaa |
9382532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 9382090 - 9382129
Alignment:
| Q |
23 |
aagggaatatttgttattcaaatccgtaccaattaagttt |
62 |
Q |
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| T |
9382090 |
aagggaatatttgttattcaaatccgtaccaattaagttt |
9382129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 23243770 - 23243705
Alignment:
| Q |
375 |
tttactaataatcctttccaccaacgtatcaaacctcataaacaaatcctctatcctcttcccaaa |
440 |
Q |
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||||| |||||||||||||||||||||||||||| | | |||||| || ||||||||||||||||| |
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| T |
23243770 |
tttacaaataatcctttccaccaacgtatcaaacttaaaaaacaagtcttctatcctcttcccaaa |
23243705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 311
Target Start/End: Complemental strand, 23243915 - 23243822
Alignment:
| Q |
218 |
ttaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaagcaatatatcaagaaagtctct |
311 |
Q |
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||||||||||||||||||| | |||||||||||||| ||| || || || ||| |||||| || ||||||| | ||||||||||||||||| |
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| T |
23243915 |
ttaccataatcaaggccttaacgtgaaccctttgaattttcatctcagagctttcatcctcgacataatcaagtaggatatcaagaaagtctct |
23243822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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