View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11776_high_16 (Length: 318)

Name: NF11776_high_16
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11776_high_16
NF11776_high_16
[»] chr4 (1 HSPs)
chr4 (19-313)||(19172553-19172847)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 19172847 - 19172553
Alignment:
Q  19 ctctatactacgggccgttgtaacaccattcaccccaaaagcatttcaaacagtaaaacatagtgaaaacatagtcaaatttggttcatttacaaacttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19172847 ctctatactacgggccgttgtaacaccattcaccccaaaagcatttcaaacagtaaaacatagtgaaaacatagtcaaatttggttcatttacaaacttt 19172748  T
Q  119 tgaaataaagaagtcatgtaatcaattacaaaaataaataacaatcaaccagttagaatctagacttaaaatgtcacataatctcatagttgatcctaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19172747 tgaaataaagaagtcatgtaatcaattacaaaaataaataacaatcaacgagttagaatctagacttaaaatgtcacataatctcatagtcgatcctaaa 19172648  T
Q  219 atatctcaagaagtcaatcaatcaatcacagcgacataacatacaaataacaaaatataatgctaacgcaatatgttattcacttctctgcttct 313  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  19172647 atatctcaagaagtcaatcaatcaatcacagtgacataacatacaaataacaaaatataatgctaacgcaatatgttgttcacttctcagcttct 19172553  T

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