View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_high_22 (Length: 289)
Name: NF11776_high_22
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 39811950 - 39812217
Alignment:
| Q |
1 |
gaagatatgtcttctgggagtggcaatgttctcacaactgtgttgaaactgattgacaaatatgacctatatggacatgtcgcataccctaaacatcata |
100 |
Q |
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| T |
39811950 |
gaagatatgtcttctgggagtggcaatgttctcacaactgtgttgaaactgattgacaagtatgacctatatggacatgtcgcataccctaaacatcata |
39812049 |
T |
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| Q |
101 |
gacaatctgatgtacctgagatatatagatttgctgctaaaacaaaggtatgtagaatatatgtacaaaacacacttcttctgcagtcgtaatgatatag |
200 |
Q |
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| T |
39812050 |
gacaatctgatgtacctgagatatatagatttgctgctaaaacaaaggtatgtagaatatatgtacaaaacacacttcttctgcagtcgtaatgatatag |
39812149 |
T |
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| Q |
201 |
ctagctggctaactagtttgatatttttctcagggagtttttataaatcctgctttagtggaaccttt |
268 |
Q |
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| T |
39812150 |
ctagccaactaactagtttgatatttttctcagggagttttcataaatcctgctttagtggaaccttt |
39812217 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 15799402 - 15799460
Alignment:
| Q |
40 |
gtgttgaaactgattgacaaatatgacctatatggacatgtcgcataccctaaacatca |
98 |
Q |
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| T |
15799402 |
gtgttgaagttgattgataagtatgacctctatggacaagttgcataccctaaacatca |
15799460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 47756745 - 47756669
Alignment:
| Q |
50 |
tgattgacaaatatgacctatatggacatgtcgcataccctaaacatcatagacaatctgatgtacctgagatatat |
126 |
Q |
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| T |
47756745 |
tgattgataagtatgacctgtatgggcaagtggcatatcctaaacaccacaaacaatctgatgttcctgaaatatat |
47756669 |
T |
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