View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_high_23 (Length: 274)
Name: NF11776_high_23
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 38850864 - 38850619
Alignment:
| Q |
12 |
tgagatgaattgttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactg |
111 |
Q |
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| T |
38850864 |
tgaggtgaattgttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactg |
38850765 |
T |
|
| Q |
112 |
caactatcatcacaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850764 |
caactatcatcacaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattg |
38850665 |
T |
|
| Q |
212 |
ataatcaattggattttggaagagtaaccttcttgtgtgtgattct |
257 |
Q |
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| T |
38850664 |
aaaatcaattggattttggaagagtaaccttcttgtgtgtgattct |
38850619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 38827290 - 38827524
Alignment:
| Q |
23 |
gttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatc |
122 |
Q |
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| T |
38827290 |
gttgtttagggctacgttagaaaaccttaaggcgcaccttatgatcgagtttaaggcaagtgagcaaataagagcacacaatagaactgcaagtatcatc |
38827389 |
T |
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| Q |
123 |
acaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattgataatcaattg |
222 |
Q |
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| T |
38827390 |
acaacatttgcatcaaattcacgaattccaaaatatgagttagttgaattatggttgtgtgtgagaacaggggagctggttggtgattgataatcaattg |
38827489 |
T |
|
| Q |
223 |
gattttggaagagtaaccttcttgtgtgtgattct |
257 |
Q |
| |
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| T |
38827490 |
gattttggaagagtaaccttcttgtgtgtgattct |
38827524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 38841075 - 38841308
Alignment:
| Q |
23 |
gttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatc |
122 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |
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| T |
38841075 |
gttgttgatggctacgtttgaaaaccttaaggcacacctgataatggagtttaatgcaagtgagcaaataaaaacacataatatgactgcaagtatcatc |
38841174 |
T |
|
| Q |
123 |
acaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattgataatcaattg |
222 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||| ||||| ||||||||| ||||| || |
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| T |
38841175 |
acaacttttgaatcaaattcacgatctccaaaatttgagtctgttgaattatggttgtttgttaaagtaggggagttggttagtgattgatgatcaactg |
38841274 |
T |
|
| Q |
223 |
gattttggaagagtaaccttcttgtgtgtgattc |
256 |
Q |
| |
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| T |
38841275 |
ggttttgaatgagtaaccttcttatgtgagattc |
38841308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 38865121 - 38865357
Alignment:
| Q |
23 |
gttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatc |
122 |
Q |
| |
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||||| || ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| |||||| |
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| T |
38865121 |
gttgtgtagggctacgttagaaaaccttaaaccacaccttatgatggagtttaatgcaagtgagcaaataagagcacacaataaaactgcaagtatcatt |
38865220 |
T |
|
| Q |
123 |
acaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaatt---gtgattgtttgttaacacaggggagctggttggtgattgataatcaa |
219 |
Q |
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| |||||||||||| ||||||||||||||||||| ||||||||||||||| || ||| |||||||| ||| ||||| | ||| ||||||||| |||| |
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| T |
38865221 |
ataacatttgaatcgaattcacgagctccaaaatatgagtctgttgaattatggttattatttgttaaaacatgggagttagttagtgattgatgttcaa |
38865320 |
T |
|
| Q |
220 |
ttggattttggaagagtaaccttcttgtgtgtgattc |
256 |
Q |
| |
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|||| | ||| |||||||||||||||||||| ||||| |
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| T |
38865321 |
ttgggtcttgaaagagtaaccttcttgtgtgagattc |
38865357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 256
Target Start/End: Original strand, 38858822 - 38859043
Alignment:
| Q |
38 |
gtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatca |
137 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||| ||||||| |||||||||||||| ||||||| |
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| T |
38858822 |
gtttgaaatccttaagaaacaccttatgatggagtttaatacaagtaaacaaataaaagcacataatagaactgcaattatcatcacaacatctgaatca |
38858921 |
T |
|
| Q |
138 |
aattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggtt---ggtgattgataatcaattggattttggaaga |
234 |
Q |
| |
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|||||||||||||| || |||||||| |||||||||| ||||| || || ||||||| | || || ||||||||| ||||| ||| ||||| | || |
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| T |
38858922 |
aattcacgagctccgaactttgagtcggttgaattgttgttgttcgtgaaaacaggggggttgattttaagtgattgatgatcaactgggttttgaatga |
38859021 |
T |
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| Q |
235 |
gtaaccttcttgtgtgtgattc |
256 |
Q |
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|||||||||||||||| ||||| |
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| T |
38859022 |
gtaaccttcttgtgtgagattc |
38859043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 49 - 256
Target Start/End: Original strand, 38861716 - 38861926
Alignment:
| Q |
49 |
ttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatcaaattcacgagc |
148 |
Q |
| |
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||||||||| ||||||||| ||||||||||||| | | ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |
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| T |
38861716 |
ttaaggcacgccttatgataaagtttaatgcaaggggaccaataaaagcacataatacaactgcaagtatcatcacaacatttgaatcaaattcaggagc |
38861815 |
T |
|
| Q |
149 |
tccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggtt---ggtgattgataatcaattggattttggaagagtaaccttctt |
245 |
Q |
| |
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|| ||||| |||||| ||||||||||| | ||||| || | | ||||| || || ||||||||| ||||| ||| ||||| | ||||||||||||| |
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| T |
38861816 |
tctaaaatatgagtcggttgaattgtggctatttgtgaaaatacgggagttgattttaagtgattgatgatcaactgggttttgaatgagtaaccttctt |
38861915 |
T |
|
| Q |
246 |
gtgtgtgattc |
256 |
Q |
| |
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||||| ||||| |
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| T |
38861916 |
gtgtgagattc |
38861926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 38846919 - 38847046
Alignment:
| Q |
53 |
ggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatcaaattcacgagctcca |
152 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||||||| |||||| |||||||| | ||||||||||||||||||||| ||||| |||||||||||| |
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| T |
38846919 |
ggcacaccttacaatggagtttaatgcaattgagcaaataatagcacacaataggacagaaactatcatcacaacatttgattcaaactcacgagctcca |
38847018 |
T |
|
| Q |
153 |
aaatttgagtctgttgaattgtgattgt |
180 |
Q |
| |
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|||| |||| |||||||||| ||||| |
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| T |
38847019 |
aaatacgagttagttgaattgttattgt |
38847046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 38847053 - 38847102
Alignment:
| Q |
208 |
attgataatcaattggattttggaagagtaaccttcttgtgtgtgattct |
257 |
Q |
| |
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|||||| ||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
38847053 |
attgatgatcaactgggttttggaagagtaaccttcttgtgtgtgattct |
38847102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 43666311 - 43666401
Alignment:
| Q |
49 |
ttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatcaaa |
139 |
Q |
| |
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|||| |||||||||||||| ||||| || |||||| ||||||| ||||||||||||||| | | || ||| |||||||||| |||||| |
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| T |
43666311 |
ttaatgcacaccttatgattgagttcaaacaaagtgaacaaataagagcacataataggacagagagtaccataacaacatttgcatcaaa |
43666401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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