View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_high_26 (Length: 264)
Name: NF11776_high_26
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_high_26 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 31438728 - 31438983
Alignment:
| Q |
9 |
gagatgaagtggagttgagttctatgttggcagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtgga |
108 |
Q |
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|||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31438728 |
gagaagaagtggagttgagtcctatgttgacagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtgga |
31438827 |
T |
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| Q |
109 |
gtctgatgctgctactattgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgttctattttagatttgttt |
208 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31438828 |
gtctgatgctgctactgttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgttctattttagatttgttt |
31438927 |
T |
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| Q |
209 |
gaggatattaaggttactgctattagtagaaatcaaaactttgttgctcatgagtt |
264 |
Q |
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| T |
31438928 |
gaggatattaaggttactgctattagtagaaatcaaaactttgttgctcatgagtt |
31438983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 31196902 - 31197147
Alignment:
| Q |
9 |
gagatgaagtggagttgagttctatgttggcagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtgga |
108 |
Q |
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| T |
31196902 |
gagaagaagtggagttgagtcttatgttggcaaaggcacttggtttgagatggtgtctcttagttgcaaaagacttgcctttaaacaaggtggtggtgga |
31197001 |
T |
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| Q |
109 |
gtctgatgctgctactattgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgttctattttagatttgttt |
208 |
Q |
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| T |
31197002 |
gtccgatgatgctactgttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaaga---ttgctctattttaaatttgttt |
31197098 |
T |
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| Q |
209 |
gaggatattaaggttactgctattagtagaaatcaaaactttgttgctc |
257 |
Q |
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| T |
31197099 |
gaggatattattgttactgctattagtagaaatcaaaactctgatgctc |
31197147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 29250221 - 29250045
Alignment:
| Q |
9 |
gagatgaagtggagttgagttctatgttggcagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtgga |
108 |
Q |
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| T |
29250221 |
gagaagaagtggatttgagtcctatgttggcggaggcacttggtttgagatggtgtctctcagttgcaaaatatttgtgtttaaacaaggtggtggtgga |
29250122 |
T |
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| Q |
109 |
gtctgatgctgctactattgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagatt |
185 |
Q |
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| T |
29250121 |
gttcaatgcagctgctgttgtggattgtatcaatgtcaaggctataatggctgcagttgatccaattatccaagatt |
29250045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 28767765 - 28767869
Alignment:
| Q |
163 |
aattgatccaattatccaagattgt---tgttctattttagatttgtttgaggatattaaggttactgctattagtagaaatcaaaactttgttgctcat |
259 |
Q |
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| T |
28767765 |
aattaatccaattatccaagattgttgttgttctattttaattttgtttgaagatatgaagattactactattagtagaaatcaaaactttgttgctgat |
28767864 |
T |
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| Q |
260 |
gagtt |
264 |
Q |
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| T |
28767865 |
gagtt |
28767869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 28768230 - 28768284
Alignment:
| Q |
206 |
tttgaggatattaaggttactgctattagtagaaatcaaaactttgttgctcatg |
260 |
Q |
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| T |
28768230 |
tttgaggatatgaagattactcatattagtagaaatcaaaactttgttgctcatg |
28768284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 28768137 - 28768202
Alignment:
| Q |
126 |
ttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgtt |
191 |
Q |
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| T |
28768137 |
ttgtggtttgtatcaatggcaaatctacgatggatgtaatttatccaattatccaagattgttgtt |
28768202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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