View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_high_31 (Length: 245)
Name: NF11776_high_31
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_high_31 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 2755656 - 2755543
Alignment:
| Q |
125 |
tttttcctctcttgttttttccttggggtacagtaactttaaatggtgccaaggaaagttaagcttcaaaaagtcaaactaaaggaatgccatcactttt |
224 |
Q |
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| T |
2755656 |
tttttcctctcttgttttttccttggggtacagtaactttaaatggtgccaaggaaagttaagcttcaaaaagtcaaactaaaggaatgccatcactttt |
2755557 |
T |
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| Q |
225 |
gttatcaacctatg |
238 |
Q |
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|||||||||||||| |
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| T |
2755556 |
gttatcaacctatg |
2755543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 2768617 - 2768421
Alignment:
| Q |
1 |
tttgtttcttcttttaggaattggaaaacttgtccaagagctgataatactgcagtttctgccattttactctcatctcttttt------atactgttgg |
94 |
Q |
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| T |
2768617 |
tttgtttcttcttttaggaattggaaaacttgcccaagagcaaataatacagcagtttctgccattttactc--atctcatattggtagtaagctgttgg |
2768520 |
T |
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| Q |
95 |
tatcatgtgtatatcatcctagtattgtgttttttcctctcttgttttttccttggggtacagtaactttaaatggtgccaaggaaagttaagcttcaaa |
194 |
Q |
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| T |
2768519 |
gatcttgtgtatatcatcctagtattgtgttttct-ctctcttgttttttcctt-gggtacagtaacttcgaatggtgccaaggaaaattaaccttcaaa |
2768422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 2806809 - 2806732
Alignment:
| Q |
1 |
tttgtttcttcttttaggaattggaaaacttgtccaagagctgataatactgcagtttctgccattttactctcatct |
78 |
Q |
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| T |
2806809 |
tttgtttcttcttttaggaatcggaacacttcatcaagggcaaataatactgcagtttctgccatttcactctcatct |
2806732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2856400 - 2856475
Alignment:
| Q |
1 |
tttgtttcttcttttaggaattggaaaacttgtccaagagctgataatactgcagtttctgccattttactctcat |
76 |
Q |
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| T |
2856400 |
tttgtttcttcttttaggaactggaacacttcccccagggcaaacaatactgcagtttctgccatttaactctcat |
2856475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 2796909 - 2796831
Alignment:
| Q |
1 |
tttgtttcttcttttaggaattggaaaacttgtccaagagctgataatactgcagtttctgccattttactctcatctc |
79 |
Q |
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| T |
2796909 |
tttgtttcttcttttaggaattcaaacactttccccagggcaaataatactgaagtttctgccatttcactctcatctc |
2796831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 5412282 - 5412237
Alignment:
| Q |
150 |
gggtacagtaactttaaatggtgccaaggaaagttaagcttcaaaa |
195 |
Q |
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| T |
5412282 |
gggtacagtaactttgaatggtgctaaggaaatttaagcttcaaaa |
5412237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 5412457 - 5412385
Alignment:
| Q |
1 |
tttgtttcttcttttaggaattggaaaacttgtccaagagctgataatactgcagtttctgccattttactct |
73 |
Q |
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| T |
5412457 |
tttgtttcttcttctaggaattggaacagtttcccaagggcaaacaatactgcagtttctgccatttaactct |
5412385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 2748383 - 2748324
Alignment:
| Q |
143 |
ttccttggggtacagtaactttaaatggtgccaaggaaagttaagcttcaaaaagtcaaa |
202 |
Q |
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| T |
2748383 |
ttccctggagtacagtaactttgaatggttccaaggcaaattaaccttcaaaaagtcaaa |
2748324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2839190 - 2839265
Alignment:
| Q |
1 |
tttgtttcttcttttaggaattggaaaacttgtccaagagctgataatactgcagtttctgccattttactctcat |
76 |
Q |
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| T |
2839190 |
tttgtttcttcttttaggaatttgaacacttcccctagggcaaacaatactgcagtctctgccatttaactctcat |
2839265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 2748546 - 2748468
Alignment:
| Q |
1 |
tttgtttcttcttttaggaattggaaaacttgtccaagagctgataatactgcagtttctgccattttactctcatctc |
79 |
Q |
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| T |
2748546 |
tttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctc |
2748468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6742 - 6807
Alignment:
| Q |
1 |
tttgtttcttcttttaggaattggaaaacttgtccaagagctgataatactgcagtttctgccatt |
66 |
Q |
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| T |
6742 |
tttgtttctttttttaggaattggaacaattctccgagggcaaacaatactgcagtttctgccatt |
6807 |
T |
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