View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11776_high_34 (Length: 241)

Name: NF11776_high_34
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11776_high_34
NF11776_high_34
[»] chr2 (3 HSPs)
chr2 (1-149)||(16541875-16542023)
chr2 (173-221)||(16541814-16541862)
chr2 (17-58)||(33174486-33174527)
[»] chr7 (2 HSPs)
chr7 (17-58)||(42515525-42515566)
chr7 (17-58)||(46425722-46425763)
[»] chr8 (2 HSPs)
chr8 (17-58)||(27022462-27022503)
chr8 (17-57)||(44041872-44041912)
[»] chr4 (1 HSPs)
chr4 (17-57)||(21220449-21220489)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 16542023 - 16541875
Alignment:
Q  1 cctacacagctccggaatccctctcattctgatgtgattcggctcgcctagaagctgtttgaagccgccttgtacactgactaccactcctcatccttat 100  Q
    |||||||||||| || |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  16542023 cctacacagctctgggatccctatcattctgatgtgattcggctcacctagaagctgtttgaagctgccttgtacactgactaccactcctcatccttct 16541924  T
Q  101 tggtctcgagcgttatagtttactcggtttaaaacacctctatttagtt 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16541923 tggtctcgagcgttatagtttactcggtttaaaacacctctatttagtt 16541875  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 16541862 - 16541814
Alignment:
Q  173 cgcaaactatttcatctaaatgtataggtaaagaaatcaacaatacagt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16541862 cgcaaactatttcatctaaatgtataggtaaagaaatcaacaatacagt 16541814  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 33174527 - 33174486
Alignment:
Q  17 atccctctcattctgatgtgattcggctcgcctagaagctgt 58  Q
    ||||||||||||| |||||||||||| ||| |||||||||||    
T  33174527 atccctctcattccgatgtgattcggttcgtctagaagctgt 33174486  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 42515566 - 42515525
Alignment:
Q  17 atccctctcattctgatgtgattcggctcgcctagaagctgt 58  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  42515566 atccctctcattctgatgtgattcggttcgtctagaagctgt 42515525  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 46425763 - 46425722
Alignment:
Q  17 atccctctcattctgatgtgattcggctcgcctagaagctgt 58  Q
    ||||||||||||| |||||||||||||| | |||||||||||    
T  46425763 atccctctcattccgatgtgattcggcttgtctagaagctgt 46425722  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 27022462 - 27022503
Alignment:
Q  17 atccctctcattctgatgtgattcggctcgcctagaagctgt 58  Q
    ||||||||||||| |||||||||||||||  |||||||||||    
T  27022462 atccctctcattccgatgtgattcggctcctctagaagctgt 27022503  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 44041912 - 44041872
Alignment:
Q  17 atccctctcattctgatgtgattcggctcgcctagaagctg 57  Q
    |||||||||||||||||||||||||| | ||||| ||||||    
T  44041912 atccctctcattctgatgtgattcggtttgcctataagctg 44041872  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 21220449 - 21220489
Alignment:
Q  17 atccctctcattctgatgtgattcggctcgcctagaagctg 57  Q
    |||||||||||||||||||||||||| ||  ||||||||||    
T  21220449 atccctctcattctgatgtgattcggttcctctagaagctg 21220489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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