View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_high_5 (Length: 585)
Name: NF11776_high_5
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 26 - 304
Target Start/End: Original strand, 2967999 - 2968278
Alignment:
| Q |
26 |
cagagatatttgttaggggtaagtttcatagtgatcaacttaattgattttcaaaataattggaaaattttattggcaagaggagggactcgattttttg |
125 |
Q |
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| T |
2967999 |
cagagatatttgttaggggtaagtttcatagtgatcaacttaattgattttcaaaataattggaaaattttattggcaattggagggactcgattttttg |
2968098 |
T |
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| Q |
126 |
gcataatccatagatgaatggggtgatgttaagagatcactttagtagattatacaatttgactagtgataaaaatggtattgttgttgatatgatgttg |
225 |
Q |
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| T |
2968099 |
gcataatccatagatgaatggtgtgatgttaagagatcactttagtagattatacaatttgactagtgataaaaatgttattgttgttgatatgatgttg |
2968198 |
T |
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| Q |
226 |
aatgatggagatgaaagtgaatttaggtagagttggaagcataagttatttcaatgg-aagatgaattgaatgtcaagtg |
304 |
Q |
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| T |
2968199 |
aatgatggagatgaaagtgaatttaggtagagttggaagcataagttatttcaatggaaagatgaattgaatgtcaagtg |
2968278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 384 - 569
Target Start/End: Original strand, 2968284 - 2968469
Alignment:
| Q |
384 |
ttttgcagacttgtgttaattagtgcttgcaactccctcgaatcatctcaacacctannnnnnnattgttcattgtttggaattcagtaatgatatagtt |
483 |
Q |
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| T |
2968284 |
ttttgcagacttgtgttaattagtgcttgcaactccctcgaatcatctcaacacctatttttttattgttcattgtttggaattcagtaatgatatagtt |
2968383 |
T |
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| Q |
484 |
ggatattgtttgtttgtcatgtcaaatattgtggtggaacaggcttaaaaaatattggataaaaagaaattatagatagatattgt |
569 |
Q |
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| T |
2968384 |
ggatattgtttgtttgtcatgtcaaatattgtggtggaacaggcttaaaaaatattggataaaaagaaattatagatagatattgt |
2968469 |
T |
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