View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_high_6 (Length: 544)
Name: NF11776_high_6
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 20 - 531
Target Start/End: Original strand, 10043969 - 10044480
Alignment:
| Q |
20 |
gcttctagggttaaattagaggttgaaaatcttcgcagtaaagaagggacgaaagttgagaatgcttatagtgacaataaatttgaagcattgaaaactt |
119 |
Q |
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| T |
10043969 |
gcttctagggttaaattagaggttgaaaatcttcgcagtaaagaagggacgaaagttgagagtgcttatagtgacagtaaatttgaagcgttgaaaactt |
10044068 |
T |
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| Q |
120 |
atggtagagacttggtcgaacaagcagggaaacttgatcctgttattggacgcgatgaagagataagaagggttgtgaggattttatcaagaaggacaaa |
219 |
Q |
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| T |
10044069 |
atggtagagacttggtcgaacaagcagggaaacttgatcctgttattggacgcgatgaagagataagaagggttgtgaggattttatcaagaaggacaaa |
10044168 |
T |
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| Q |
220 |
gaacaatcctgttattataggtgagccaggtgttggtaaaacagctgttgttgaagggttggctaagagaatagttagaggagatgttcctagtaatctt |
319 |
Q |
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| T |
10044169 |
gaacaatcctgttattataggtgagccaggtgttggtaaaacagctgttgttgaagggctggctaagagaatagttagaggagatgttcctagcaatctt |
10044268 |
T |
|
| Q |
320 |
gccgatgttagattatttgctttggatatgggagcgttagtcgctggtactcagtataggggacaatttgaacaaaggttgaaggcagttttgaaagaag |
419 |
Q |
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| T |
10044269 |
gctgatgttaggttatttgctttggatatgggagcgttagtcgctggtactcagtataggggacaatttgaacaaaggttgaaggcagttttgaaagaag |
10044368 |
T |
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| Q |
420 |
tggaagatgctgaagggaaggttattgttttcattgatgaaattcatcttgttctcggtgccggtcaatgtcaaggatcaatggatgctgctaatctttt |
519 |
Q |
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| T |
10044369 |
tggaagatgctgaagggaaggttattgttttcattgatgaaattcatcttgttctcggtgccggtcaatgtcaaggatcaatggatgctgctaatctttt |
10044468 |
T |
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| Q |
520 |
gaaacctatgct |
531 |
Q |
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| T |
10044469 |
gaaacctatgct |
10044480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 105 - 519
Target Start/End: Original strand, 45466166 - 45466580
Alignment:
| Q |
105 |
aagcattgaaaacttatggtagagacttggtcgaacaagcagggaaacttgatcctgttattggacgcgatgaagagataagaagggttgtgaggatttt |
204 |
Q |
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| T |
45466166 |
aagcattgaagacttatggtagagatttggttgaacaagcagggaagcttgatcctgttattggacgcgacgaagagattcgaagagttgtgaggatttt |
45466265 |
T |
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| Q |
205 |
atcaagaaggacaaagaacaatcctgttattataggtgagccaggtgttggtaaaacagctgttgttgaagggttggctaagagaatagttagaggagat |
304 |
Q |
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| T |
45466266 |
gtcaaggaggactaagaataatccagttcttattggtgagcctggtgttgggaaaactgctgttgttgaagggttggctcagaggattgttagaggtgat |
45466365 |
T |
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| Q |
305 |
gttcctagtaatcttgccgatgttagattatttgctttggatatgggagcgttagtcgctggtactcagtataggggacaatttgaacaaaggttgaagg |
404 |
Q |
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| T |
45466366 |
gttcctagcaatcttgctgatgttaggttaattgctctggatatgggagcattggttgctggtgcgaagtataggggagaatttgaagagaggttgaagg |
45466465 |
T |
|
| Q |
405 |
cagttttgaaagaagtggaagatgctgaagggaaggttattgttttcattgatgaaattcatcttgttctcggtgccggtcaatgtcaaggatcaatgga |
504 |
Q |
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| T |
45466466 |
ctgttttgaaagaagttgaagaagctgaagggaaggttattcttttcattgatgagattcatcttgttcttggagctggtagaacagaaggatcaatgga |
45466565 |
T |
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| Q |
505 |
tgctgctaatctttt |
519 |
Q |
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| T |
45466566 |
tgctgctaatctttt |
45466580 |
T |
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