View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_high_9 (Length: 431)
Name: NF11776_high_9
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 52262816 - 52263210
Alignment:
| Q |
18 |
cctctgagtgtgtcttttattgaaataataagaattcgcattggagtttggtgcaattatgggaatatgagtagtataaactgaaccaccaacatttggt |
117 |
Q |
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| T |
52262816 |
cctctgagtgtgtcttttattgaaataataagaattcacattggagttaggtgcaattatgggaatatgagtagtataaactgaaccaccaacatttggt |
52262915 |
T |
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| Q |
118 |
attccagaaagaccctcaaactcttgtttaaccaatatcatgttattttcatctggccatagaatgaactttggcataagaacggtttttattgcagagc |
217 |
Q |
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| T |
52262916 |
attccagaaagaccctcaaactcttgtttaaccaatatcatgttattttcatctggccatagaatgaactttggcataagaacggtttttatttcagagc |
52263015 |
T |
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| Q |
218 |
aaacatctagaacgagcttgtgacatgtggataaacccaaaccaaatcgttctgaaacaagcctataaggatcacctgtggcaagtctccaaatacaagc |
317 |
Q |
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| T |
52263016 |
aaacatctagaacgagcttgtgacatgtggataaacccaaaccaaatcgttctgaaacaagcctataaggatcacctgtggcaagtctccaaatacaagc |
52263115 |
T |
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| Q |
318 |
cgccactcgctgccggagaggaacagcgtcgcggagcgtcgtgtttttcttggtgactgttgaatcaagttctctgcatataaactcaaaggttt |
412 |
Q |
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| T |
52263116 |
cgctactcgctgccggagaggaatagcgtcgcggagcgtcgtgtttttcttggtgacagttgaatcaagttctctgcatataaactcaaaggttt |
52263210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 44 - 332
Target Start/End: Original strand, 52251197 - 52251485
Alignment:
| Q |
44 |
aataagaattcgcattggagtttggtgcaattatgggaatatgagtagtataaactgaaccaccaacatttggtattccagaaagaccctcaaactcttg |
143 |
Q |
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| T |
52251197 |
aataagaattcacattgttcttaggtgcaattattggaatatgtgtggtatacattgaaccaccaacatttggcattccaaaaagaccctcaaactcttg |
52251296 |
T |
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| Q |
144 |
tttaaccaatatcatgttattttcatctggccatagaatgaactttggcataagaacggtttttattgcagagcaaacatctagaacgagcttgtgacat |
243 |
Q |
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||||| ||| |||| ||||||||||| ||||| ||| ||||||||||||||||| | || ||||||| ||||| || ||||| ||||| ||||| |
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| T |
52251297 |
tttaatcaaattcatcttattttcatcaggccaagtaataaactttggcataagaactttcttgattgcagcacaaacctcaagaaccagcttatgacag |
52251396 |
T |
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| Q |
244 |
gtggataaacccaaaccaaatcgttctgaaacaagcctataaggatcacctgtggcaagtctccaaatacaagccgccactcgctgccg |
332 |
Q |
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| T |
52251397 |
gtggatatacccaaaccgaacctctttgaaaccagccttagaggatcaccggtggcgagtctccagatacaaaccgccacgcgctgccg |
52251485 |
T |
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