View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_low_1 (Length: 1116)
Name: NF11776_low_1
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_low_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 728; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 280 - 1116
Target Start/End: Original strand, 39811128 - 39811960
Alignment:
| Q |
280 |
taacatgtcaattaattcagagtatttcaggtcttcaaacttattattggnnnnnnnnnnnnnttgcatagcatatatcagttatctctttgatggtttt |
379 |
Q |
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| T |
39811128 |
taacatatcaattaattcagagtattttaggtcttcaaacttaatattggaaaaaagtaaaaattgcatagcatatatcagttatctctttgatggtttt |
39811227 |
T |
|
| Q |
380 |
atgtaaacaataccatgtcttaaatggaatttctgcaggttatccctcctggtatggactttagcaatgtggtgatacaagaagatggccctgaagtcga |
479 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39811228 |
atgtgaacaataccatgtcttaaatggaatttctgcaggttatccctcctggtatggactttagcaatgtggtgatacaagaagatggccctgaagttga |
39811327 |
T |
|
| Q |
480 |
tggggatctctcacagcttactggtggtgctgatggatcttcttcaccaaaagctttaccttcaatttggttagaagtgagtaacttatacagtgataat |
579 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39811328 |
tggggatctctcacagcttactggtggtgctgatggatcttcttcaccaaaagctttaccttcaatttggttagaagtgagtaacttatacagtgataat |
39811427 |
T |
|
| Q |
580 |
attcgtttagtcatacatctcttaaaggaaggatatataagaatgtgatcatatatgcctcaaggttttgagtgtagatcaatatttcttaggggtcatc |
679 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39811428 |
attcgtttagtcatacatctcttaaaggaaggatatataagaatgtgattatatatgcctcaaggttttgagtgtagatcaatatttcttaggggtcatc |
39811527 |
T |
|
| Q |
680 |
ctggtcattagctcgttgtagccgataaccaaagaattactatgtcacgcaataaccaaatatattnnnnnnnctgaaatactaatagtacaaagtttgg |
779 |
Q |
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| T |
39811528 |
ctggtcattagctcgttgtagccgataaccaaagaattactatgtcacgcaataaccaaatatattaaaaaaactgaaatactaatagtacaaagtttgg |
39811627 |
T |
|
| Q |
780 |
aggcattacttatatttgctcttattacaccttagttagtactgttattaacttgaaactaataacattatgcaggtgatgcgtttcttcacaaatcctc |
879 |
Q |
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| T |
39811628 |
aggcattacttatatttgctcttattacaccttagttagtactgttattaacttgaaactaataacattatgcaggtgatgcgtttcttcacaaatcctc |
39811727 |
T |
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| Q |
880 |
acaagcctatgatattagccttatcaaggccagatccaaagaagaacataacaactctattaaaagcttttggagaaaatcgttccttaagaaaactagc |
979 |
Q |
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| T |
39811728 |
acaagcctatgatattagccttatcaaggccagatccaaagaagaacataacaactctattaaaggcttttggagaaaatcgttccttaagaaaactagc |
39811827 |
T |
|
| Q |
980 |
taatcttgtaagtaacaacttaacataattcaattgccacacttggtggaaaatatgattgagcaattgtgaaatgactaatatgtttctaaacagaccc |
1079 |
Q |
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| T |
39811828 |
taatcttgtaagtaacaacttaacataattcaattgccacacttggtggaaaata----tgagcaattgtgaaatgacaaatatgtttctaaacagaccc |
39811923 |
T |
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| Q |
1080 |
ttataatgggaaacagagatgacatagaagatatgtc |
1116 |
Q |
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| T |
39811924 |
ttataatgggaaacagagatgacatagaagatatgtc |
39811960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 39810817 - 39811080
Alignment:
| Q |
19 |
atcaattcaacgtataagataatgagaaggatagaagcagaagagctttccctggatgctgcagaacttgtcatcactagtacaagacaagaaattgatg |
118 |
Q |
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| T |
39810817 |
atcaattcaacgtataagataatgagaaggatagaagcagaagagctttccctggatgctgcagaacttgtcatcactagtacaagacaagaaattgatg |
39810916 |
T |
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| Q |
119 |
aacaatggggactttatgatgggtttgatgtcaagcttgagaaagttttgcgtgcccgtgataggcgtggtgtcaattgtcatggtcgttacatgcctag |
218 |
Q |
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| T |
39810917 |
aacaatggggactttatgatgggtttgatgtcaagcttgaaaaagttttgcgtgcccgtgataggcgtggtgtcaattgtcatggtcgttacatgcccag |
39811016 |
T |
|
| Q |
219 |
aatggcggtaagaatgcagtttttagcatactgaagttgaagatcatttagtatttgagattaa |
282 |
Q |
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| T |
39811017 |
aatggcggtaagaatgcagtttttagcatactgaagttgaagatcatttagtatttgagattaa |
39811080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 1e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 15798188 - 15798398
Alignment:
| Q |
19 |
atcaattcaacgtataagataatgagaaggatagaagcagaagagctttccctggatgctgcagaacttgtcatcactagtacaagacaagaaattgatg |
118 |
Q |
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|||||||||| ||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||| |||||||||||| | |
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| T |
15798188 |
atcaattcaatgtataagatgatgaggaggatagaagcagaagaactttcccttgatgctgcagaacttgttattactagtacaaaacaagaaattgagg |
15798287 |
T |
|
| Q |
119 |
aacaatggggactttatgatgggtttgatgtcaagcttgagaaagttttgcgtgcccgtgataggcgtggtgtcaattgtcatggtcgttacatgcctag |
218 |
Q |
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| T |
15798288 |
agcagtggggactttatgatggattcgatgtcaagcttgagaaagtattgcgtgctcgagccagacgtggtgtcaattgtcatggtcgatacatgccaag |
15798387 |
T |
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| Q |
219 |
aatggcggtaa |
229 |
Q |
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|||||||||| |
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| T |
15798388 |
gatggcggtaa |
15798398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 847 - 992
Target Start/End: Original strand, 15799110 - 15799255
Alignment:
| Q |
847 |
ttatgcaggtgatgcgtttcttcacaaatcctcacaagcctatgatattagccttatcaaggccagatccaaagaagaacataacaactctattaaaagc |
946 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||| |||| || |||||||||||||||||||||||||||||| |||| || || ||||||| |
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| T |
15799110 |
ttatgcaggtgatgcgtttctttacaaatcctcacaaacctgtgatcttggccttatcaaggccagatccaaagaagaacttaaccacgcttctaaaagc |
15799209 |
T |
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| Q |
947 |
ttttggagaaaatcgttccttaagaaaactagctaatcttgtaagt |
992 |
Q |
| |
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||||| |||| |||| |||||||| |||| || || ||||||||| |
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| T |
15799210 |
atttggcgaaagtcgtcccttaagagaacttgcaaaccttgtaagt |
15799255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 415 - 565
Target Start/End: Original strand, 15798743 - 15798893
Alignment:
| Q |
415 |
caggttatccctcctggtatggactttagcaatgtggtgatacaagaagatggccctgaagtcgatggggatctctcacagcttactggtggtgctgatg |
514 |
Q |
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| T |
15798743 |
caggttatcccacctggtatggactttagcaatgttgtgatacaagaagattgtcctgatgttgatggagagcttgctcagcttactggtggtggtgtcg |
15798842 |
T |
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| Q |
515 |
gatcttcttcaccaaaagctttaccttcaatttggttagaagtgagtaact |
565 |
Q |
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| T |
15798843 |
aagggtcttcaccaaaagcagtgcctccaatttggtcagaagtaagtaact |
15798893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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