View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_low_10 (Length: 426)
Name: NF11776_low_10
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 4840702 - 4840281
Alignment:
| Q |
1 |
aaaataaataaaccgcaaaataattttgcgtttggcgctgaagtaattgttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatc |
100 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4840702 |
aaaaaaaataaaccgcaaaat---tttgcgtctggcgctgaagtaattgttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatc |
4840606 |
T |
|
| Q |
101 |
acttcatcgaacctaaacctctcaaacatctacccacaaatccttcaaattttaacttctctactccgaacccttcaaaccatatgccatcatctcaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4840605 |
acttcatcgaacctaaacctctcaaacatctacccacagatccttcaaattttaacttctctactccgaacccttcaaaccatatgccatcatctcaact |
4840506 |
T |
|
| Q |
201 |
tctcacagaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcactccaccctttgacgaaactg |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4840505 |
tctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcactgcaccctttgacgaaactg |
4840406 |
T |
|
| Q |
301 |
tcgaactaatagaagtcgttttctgcatgcttttccttctcactcgtacctgtaagtctttcgggttattgcgctcggactgttgttaattttatttgct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4840405 |
tcgaactaatagaagtcgttttctgcatgcttttccttctcactcgtacctgtaagtctttcgggttattgcgctcggactgttgttaattttatttgct |
4840306 |
T |
|
| Q |
401 |
gataaaaagaatatatattttgatg |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
4840305 |
gataaaaagaatatatattttgatg |
4840281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 362
Target Start/End: Complemental strand, 14361108 - 14360756
Alignment:
| Q |
10 |
aaaccgcaaaataattttgcgtttggcgctgaagtaattgttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatcacttcatcg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14361108 |
aaaccgcaaaataattttgcgtttggcgttgaagtaatttttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatcacttcatcg |
14361009 |
T |
|
| Q |
110 |
aacctaaacctctcaaacatctacccacaaatccttcaaattttaacttctctactccgaacccttcaaaccatatgccatcatctcaacttctcacaga |
209 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
14361008 |
aacctaaccctctcaaacatctacccacaaatccttcaaattttaacttctctagtccgaacccttcaaaccatatgccatcatctcaacttctcactga |
14360909 |
T |
|
| Q |
210 |
accctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcactccaccctttgacgaaactgtcgaactaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
14360908 |
accctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcactgcaccctttgacgaaactgacgaactaa |
14360809 |
T |
|
| Q |
310 |
tagaagtcgttttctgcatgcttttccttctcactcgtacctgtaagtctttc |
362 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14360808 |
tagaagtcgttttctgcacgcttttccttctcactcgtacctgtaagtctttc |
14360756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 362
Target Start/End: Complemental strand, 13069948 - 13069592
Alignment:
| Q |
10 |
aaaccgcaaaataattttgcgtttggcgctgaagtaa----ttgttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatcacttc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
13069948 |
aaaccgcaaaataattttgcgtttggcgctgaagtaagtaattgttcattccctctcctcttttctgcacccaaagcacaacttctaccaaaatcacttc |
13069849 |
T |
|
| Q |
106 |
atcgaacctaaacctctcaaacatctacccacaaatccttcaaattttaacttctctactccgaacccttcaaaccatatgccatcatctcaacttctca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13069848 |
atcgaacctaaacctctcaaacatctacccacagatccttcaaattttaacttctctagtccgaacccttcaaaccatatgccatcatctcaacttctca |
13069749 |
T |
|
| Q |
206 |
cagaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcactccaccctttgacgaaactgtcgaa |
305 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||| |
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| T |
13069748 |
ctgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacgaattcattcactgcaccctttgatgaaactgtcgaa |
13069649 |
T |
|
| Q |
306 |
ctaatagaagtcgttttctgcatgcttttccttctcactcgtacctgtaagtctttc |
362 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13069648 |
ctaatagaagtcgttttctgcacgcttttccttctcactcgtacctgtaagtctttc |
13069592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 359 - 425
Target Start/End: Complemental strand, 14359964 - 14359898
Alignment:
| Q |
359 |
tttcgggttattgcgctcggactgttgttaattttatttgctgataaaaagaatatatattttgatg |
425 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14359964 |
tttcgggttattgtgctcggactgttgttaattttatttgctgataaaaagaatatatattttgatg |
14359898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 28157192 - 28157553
Alignment:
| Q |
1 |
aaaataaataaaccgcaaaataattttgcgtttggcgctgaagtaattgttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatc |
100 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28157192 |
aaaaaaaaaaaacctcaaaataattttgcgtttggcgctgaagtaattgttcattccctctcctcttttctgcacccaaaacacaacttctaccaaaatc |
28157291 |
T |
|
| Q |
101 |
acttcatcgaacctaaacctctcaaacatctacccacaaatccttcaaattttaacttctctactccgaacccttcaaaccatatgccatcatctcaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28157292 |
acttcatcgaacctaaacctctcaaacatctacccacatatccttcaaattttaacttctctagtccgaacccttcaaaccatatgtcatcatctcaact |
28157391 |
T |
|
| Q |
201 |
tctcacagaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacaaattcattcactccaccctttgacgaaactg |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| |
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|
| T |
28157392 |
tctcactgaaccctctcatctccacccagaaattcttctcaatagaaccctaacccatcatctcatacgaattcattcactgcaccctttgatgaaactg |
28157491 |
T |
|
| Q |
301 |
tcgaactaatagaagtcgttttctgcatgcttttccttctcactcgtacctgtaagtctttc |
362 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28157492 |
tcgaactaatagaagtcgttttctgcacgcttttccttctcactcgtacctgtaagtctttc |
28157553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 359 - 425
Target Start/End: Original strand, 28158358 - 28158424
Alignment:
| Q |
359 |
tttcgggttattgcgctcggactgttgttaattttatttgctgataaaaagaatatatattttgatg |
425 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28158358 |
tttcgggttattgtgctcggactgttgttaattttatttgctgataaaaagaatatatattttgatg |
28158424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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