View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11776_low_11 (Length: 421)
Name: NF11776_low_11
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_low_11 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 229 - 421
Target Start/End: Complemental strand, 13147682 - 13147490
Alignment:
| Q |
229 |
tgttcatctaaccaatcatatgttgtcaaaggtagtgtctaagaactcattgaggtaaaaatttataatttcnnnnnnntgtttgatttgaaaatgcaaa |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
13147682 |
tgttcatctaaccaatcatatgttgtcaaaagtagtgtctaagaactcattaaggtaaaaatttataatttcaaaaaaatgtttcatttgaaaatgcaaa |
13147583 |
T |
|
| Q |
329 |
gcctagtgttaatcatgcgaagtcaacaattattgatgtaaatgcatcacattctttannnnnnncataagaattaatactaaacttttttac |
421 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13147582 |
gtctagtgttaatcatgcgaagtcaacaattattgatgtaaatgcatcacattctttatttttttcataagaattaatactaaacttttttac |
13147490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 13147901 - 13147762
Alignment:
| Q |
17 |
atgtttttgagaagacaaaaagtaaacaaatttaataaatctcaacaagtcgaaattgagcataatatggaaatcgaattattaagattccttttgcaat |
116 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13147901 |
atgtttttgagaagacaaaaggtaaataaatttaataaatctcaacaagtcgaaattgagcataatatggaaatcgaattattaagattccttttgcaat |
13147802 |
T |
|
| Q |
117 |
tgtaatccggaaaatgttgatgaagaaatagcttttcaag |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13147801 |
tgtaatccggaaaatgttgatgaagaaatagctttccaag |
13147762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University