View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_low_13 (Length: 391)
Name: NF11776_low_13
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 47 - 381
Target Start/End: Original strand, 4840729 - 4841063
Alignment:
| Q |
47 |
aatttggtatgctgtatgtgcaaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcaccagaaaacgctatcacactc |
146 |
Q |
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| T |
4840729 |
aatttggtatgccgtatgtgcaaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcactagaaaacgctatcacactc |
4840828 |
T |
|
| Q |
147 |
ttatcatcacacaccnnnnnnnnnnnnnnnnnnnnnnaataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgc |
246 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4840829 |
ttatcatcacacaccttttttttttataattttttttaataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgc |
4840928 |
T |
|
| Q |
247 |
gtaacggaagtgctattattaatattagagtcaatcttttcatagcattttctctaaaagtgctattaaattagcgtttccgttataatagtccttatga |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4840929 |
gtaacggaagtgctattattaatattagagtcaatcttttcatagcattttctctaaaagtgctattaaattagcgtttccgttataatagtccttatga |
4841028 |
T |
|
| Q |
347 |
acatcaaattaagtttggtatttttcattattcat |
381 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
4841029 |
acatcaaattaagtttggtatttttcattattcat |
4841063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 184 - 321
Target Start/End: Complemental strand, 38285828 - 38285691
Alignment:
| Q |
184 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattattaatattagagtcaatct |
283 |
Q |
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||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||| |
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| T |
38285828 |
aataccatataatagcactttctataaaaagactaatatagatgtcacgttataatagcacgggtaacggaaatgctattattaatattatagtcaatct |
38285729 |
T |
|
| Q |
284 |
tttcatagcattttctctaaaagtgctattaaattagc |
321 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| |
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| T |
38285728 |
tttcatagcattttttctaaaagtgctattaaattagc |
38285691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 4834278 - 4834331
Alignment:
| Q |
329 |
ttataatagtccttatgaacatcaaa-ttaagtttggtatttttcattattcat |
381 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4834278 |
ttataatagtccttatgaacatcaaaattaagtttggtatttttcattattcat |
4834331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 60 - 322
Target Start/End: Original strand, 14361134 - 14361396
Alignment:
| Q |
60 |
gtatgtgcaaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcaccagaaaacgctatcacactcttatcatcacaca |
159 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
14361134 |
gtatgtgcaaagatagcccttccccataaaacgctaacaaatcatttacaccaatattagcgttcactagaaaacgctatcacactcctatcatcacact |
14361233 |
T |
|
| Q |
160 |
ccnnnnnnnnnnnnnnnnnnnnnnaataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgc |
259 |
Q |
| |
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|| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14361234 |
cctctttattttatcattttttttaataccatataacagcactttgtataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaaatgc |
14361333 |
T |
|
| Q |
260 |
tattattaatattagagtcaatcttttcatagcattttctctaaaagtgctattaaattagcg |
322 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
14361334 |
tattattaatattagagtcaatcttttgatagcattttctctaaaagtgttattaaattagcg |
14361396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 60 - 322
Target Start/End: Original strand, 13069979 - 13070239
Alignment:
| Q |
60 |
gtatgtgcaaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcaccagaaaacgctatcacactcttatcatcacaca |
159 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||||||||| |
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| T |
13069979 |
gtatgtgcaaagatagcccttccccataaaacgctaacaaatcatttacaccaatattagcgttcactagaaaacgctattacacccctatcatcacact |
13070078 |
T |
|
| Q |
160 |
ccnnnnnnnnnnnnnnnnnnnnnnaataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgc |
259 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
13070079 |
cctctttttttattattttttt--aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcttgcgtaacggaaatgc |
13070176 |
T |
|
| Q |
260 |
tattattaatattagagtcaatcttttcatagcattttctctaaaagtgctattaaattagcg |
322 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13070177 |
tattattaatattagagtcaatcttttcatagcattttctctaaaagtgctattaaattagcg |
13070239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 184 - 322
Target Start/End: Complemental strand, 28157057 - 28156919
Alignment:
| Q |
184 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattattaatattagagtcaatct |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
28157057 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaaatgctattattaatattatagtcaatct |
28156958 |
T |
|
| Q |
284 |
tttcatagcattttctctaaaagtgctattaaattagcg |
322 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
28156957 |
tttcatagcattttctctaaaagtgctattaaattagcg |
28156919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 28157166 - 28157080
Alignment:
| Q |
60 |
gtatgtgcaaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcaccagaaaacgctatcacactc |
146 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28157166 |
gtatgtgcaaagataaccctttcccataaaacgctaacaaatcatttacaccaatattagcgttcactagaaaacgctatcacactc |
28157080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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