View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_low_14 (Length: 349)
Name: NF11776_low_14
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 119 - 347
Target Start/End: Complemental strand, 51196008 - 51195780
Alignment:
| Q |
119 |
tgagtcatccatccttccattcatcttggtatatatgctcttcctcgaacaaaggttttctcattcacatatatatgcaattgccgtaacgctcttgtcg |
218 |
Q |
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| T |
51196008 |
tgagtcatccatccttccattcatcttggtatatatgctcttcctcgaacaaaggttttctcattcacatatatatgcaattgccgtaacgctcttgtcg |
51195909 |
T |
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| Q |
219 |
atgcatctaaatgacacaccacatgaccaccattgcaaggaaaactttcgatacatctaatacaatacttcttctacctcatatttcttacgcaacaatt |
318 |
Q |
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| T |
51195908 |
atgcatctaaatgacacaccacatgaccaccattgcaaggaaaactttcgatacatctaatacaatacttcttctacctcatatttcttacgcagcaatt |
51195809 |
T |
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| Q |
319 |
tcaatttcaacgaccaaaatgtccctttg |
347 |
Q |
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| T |
51195808 |
tcaatttcaacgaccaaaatgtccctttg |
51195780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 51196090 - 51196033
Alignment:
| Q |
53 |
tattgttcaacactcatttttgcatctaatatgagacttctgtctcacatttgctaca |
110 |
Q |
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|||||||||||| |||||||||||| |||||| |||||| |||||||||||||||||| |
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| T |
51196090 |
tattgttcaacattcatttttgcatttaatataagacttttgtctcacatttgctaca |
51196033 |
T |
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