View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_low_17 (Length: 313)
Name: NF11776_low_17
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 5686834 - 5686534
Alignment:
| Q |
1 |
tgctactaccaacatttgtcactgtcctctttatagttttggtgtaattgagtttatggatttgtattgatggatagttgagatcaaatggttgaggtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5686834 |
tgctactaccaacatttgtcactgtcctctttatagttttggtgtaattgagtttatggatttgtattgatggatagttgagatcaaatggttgaggtag |
5686735 |
T |
|
| Q |
101 |
tgggtttggacaattatatgtaaggtttatgtgttgtgttaaattaagattgcaaaggtaaagaaggtaatccatgtaggatgcatcataaatgagtcct |
200 |
Q |
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| T |
5686734 |
tgggtttggacaattatatgtaaggtttatgtgttgtgttaaattaagattacaaaggtaaagaaggtaatccatgtaggatgcatcataaatgagtcct |
5686635 |
T |
|
| Q |
201 |
ggatctgatgctcttttagggtagaagtggcctgaacccattgcaaaaggtgttgtagggtttcctgtttcatcagtcattggatttcctgtgttgtctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5686634 |
ggatctgatgctcttttagggtagaagtggcctgaacccattgcaaaaggtgttgtagggtttcctgtttcatcagtcattggatttcctgtgttgtctg |
5686535 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
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| T |
5686534 |
t |
5686534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 5699039 - 5698739
Alignment:
| Q |
1 |
tgctactaccaacatttgtcactgtcctctttatagttttggtgtaattgagtttatggatttgtattgatggatagttgagatcaaatggttgaggtag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5699039 |
tgctactaccaacatttgtcactgtcctctttatagttttggtgtaattgagtttatggatttgtattgatggatagttgagatcaaatggttgaggtag |
5698940 |
T |
|
| Q |
101 |
tgggtttggacaattatatgtaaggtttatgtgttgtgttaaattaagattgcaaaggtaaagaaggtaatccatgtaggatgcatcataaatgagtcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5698939 |
tgggtttggacaattatatgtaaggtttatgtgttgtgttaaattaagattacaaaggtaaagaaggtaatccatgtaggatgcatcataaatgagtcct |
5698840 |
T |
|
| Q |
201 |
ggatctgatgctcttttagggtagaagtggcctgaacccattgcaaaaggtgttgtagggtttcctgtttcatcagtcattggatttcctgtgttgtctg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||||||||| |
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| T |
5698839 |
ggatctgatgctcttttagggtagaagtggcctgaacccattgcaaaaggtgttgcaggatttcctgtttcatctgtaattggatttcctgtgttgtctg |
5698740 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
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|
| T |
5698739 |
t |
5698739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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