View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_low_2 (Length: 829)
Name: NF11776_low_2
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 761; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 20 - 812
Target Start/End: Original strand, 414028 - 414820
Alignment:
| Q |
20 |
ggaacatatgccggtattaagaaaaatcatcggcaagcatggagatattgtgaagaactgcacgacaaagtttgtgaagttccgttcattgttcttggag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
414028 |
ggaacatatgccggtattaagaaaaatcatcggcaagcatggagatattgtgaagaactgcacgacaaagtttgtgaagttccgttcattgttcttggag |
414127 |
T |
|
| Q |
120 |
gcaatctgtgaaatcatagcagagttggacaaaaagaatgctagtattgctaacatctcaagcaaaaacctggaaaagaagattgacgtcgtgagttata |
219 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
414128 |
gcaatttgtgaaatcatagcagagttggacaaaaagaatgctagtattgctaacatctcaagcaaaaacctggaaaagaagattgacgtcgtgagttata |
414227 |
T |
|
| Q |
220 |
taaaaaaccagaacgtggatgttgaatggcttcacagcaggctaactgagatacttgaggcaaggcgaattcttaagcagacttgcaagctgatacagga |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
414228 |
taaaaaaccagaacgtggatgttgaatggcttcacagcaggctaactgagatacttgaggcaaggcgaattcttaagcagacttgcaagctgatacagga |
414327 |
T |
|
| Q |
320 |
tacagacagcgttaggttggtgactgaagctgctgaaagagatttgaacaaatgggaagcaaggaaggaggaactgacagagaaggttaaagtaatattt |
419 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
414328 |
aacagacagcgttaggatggtgactgaagctgctgaaagagatttgaacaaatgggaagcaaggaaggaggaactgacagagaaggttaaagaaatattt |
414427 |
T |
|
| Q |
420 |
cttgaattgaaagaagcaactgataaggaagctgattgcaaagaaagattggttagagcgcacaatgagtctaccaagatatctcaaatagtcaaagatg |
519 |
Q |
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| T |
414428 |
catgaattgaaagaagcaactgataaggaagctgattgcaaagaaagattggttagagcgcacaatgagtctaccaagatatctcaaatagtcaaagatg |
414527 |
T |
|
| Q |
520 |
ccaaatctaaagtcagacgatttcttgactgctcacttattgatgatttgctttagtatgttgcaatttcatctccttttcttcttttttcatactactg |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
414528 |
ccaaatctaaagtcagacgatttcttgactgctcacttattgatgatttgctttagtatgttgcaatttcatctccttttcttcttgtttcatactactg |
414627 |
T |
|
| Q |
620 |
gtttatgatttctctttctcagtgcatttagaactgttatgattttaagactatgttgtttcccgactcatgcatgacttgaacacttacttgtggaaat |
719 |
Q |
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| T |
414628 |
gtttatgatttctctttctcagtgcacttagaactgttatgattttaagactatgttgtttcccgactcatgcatgacttgaacacttacttgtggaaat |
414727 |
T |
|
| Q |
720 |
ttggtcgtaaatgtgtaagattataacaaagtatttatgcatggtgatttgaatcttcatatgaatgtgccttatacatttgcttgaatgatg |
812 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
414728 |
ttggtcgtaaatgtgtaagattataacaaagtatttatgcatggtgatttgaatcttcatatgaatgtgccttatacatttgcttaaatgatg |
414820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 7527817 - 7527762
Alignment:
| Q |
36 |
ttaagaaaaatcatcggcaagcatggagatattgtgaagaactgcacgacaaagtt |
91 |
Q |
| |
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||||||||| | |||||||||||||||||||||| |||||| ||||| ||||||| |
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| T |
7527817 |
ttaagaaaagttatcggcaagcatggagatattgcgaagaattgcacttcaaagtt |
7527762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 6e-33; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 440 - 596
Target Start/End: Complemental strand, 37211772 - 37211616
Alignment:
| Q |
440 |
tgataaggaagctgattgcaaagaaagattggttagagcgcacaatgagtctaccaagatatctcaaatagtcaaagatgccaaatctaaagtcagacga |
539 |
Q |
| |
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|||||| || |||||||| ||||| |||||| |||| ||| ||||||||||||| | |||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
37211772 |
tgataaagaggctgattggaaagagagattgactagaatgcaggatgagtctaccaaaacatctcaaagagtaaaagatgtcaaatctaaagtcagacga |
37211673 |
T |
|
| Q |
540 |
tttcttgactgctcacttattgatgatttgctttagtatgttgcaatttcatctcct |
596 |
Q |
| |
|
||| |||| |||||||| ||||||| ||||||||||||||||| |||||| |||||| |
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| T |
37211672 |
tttgttgattgctcactaattgatggtttgctttagtatgttgtaatttcttctcct |
37211616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 440 - 595
Target Start/End: Complemental strand, 37217454 - 37217299
Alignment:
| Q |
440 |
tgataaggaagctgattgcaaagaaagattggttagagcgcacaatgagtctaccaagatatctcaaatagtcaaagatgccaaatctaaagtcagacga |
539 |
Q |
| |
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|||||| || |||||||| ||| | |||||||||||| ||| ||||||||||||||| || ||| | ||||||||| ||||||||||||||||| | |
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| T |
37217454 |
tgataaagaggctgattggaaaaagagattggttagaatgcatgatgagtctaccaagacattcaaaagaatcaaagatggcaaatctaaagtcagacaa |
37217355 |
T |
|
| Q |
540 |
tttcttgactgctcacttattgatgatttgctttagtatgttgcaatttcatctcc |
595 |
Q |
| |
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|||||| | ||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
37217354 |
tttcttaatggctcactggttgatgatttgatttagtatgttgcaatttcatctcc |
37217299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 688 - 804
Target Start/End: Complemental strand, 37211559 - 37211445
Alignment:
| Q |
688 |
catgcatgacttgaacacttacttgtggaaatttggtcgtaaatgtgtaagattataacaaagtatttatgcatggtgatttgaatcttcatatgaatgt |
787 |
Q |
| |
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||||| ||||||||||| ||||| |||||| |||||| | ||| |||||||||||| | |||||||||||||||||||||||||| | ||||||||||| |
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| T |
37211559 |
catgcgtgacttgaacaattactcgtggaa-tttggtggcaaa-gtgtaagattatggcgaagtatttatgcatggtgatttgaatttccatatgaatgt |
37211462 |
T |
|
| Q |
788 |
gccttatacatttgctt |
804 |
Q |
| |
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|||||||| |||||||| |
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| T |
37211461 |
gccttatagatttgctt |
37211445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 34 - 296
Target Start/End: Complemental strand, 37212172 - 37211916
Alignment:
| Q |
34 |
tattaagaaaaatcatcggcaagcatggagatattgtgaagaactgcacgacaaagtttgtgaagttccgttcattgttcttggaggcaatctgtgaaat |
133 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||| ||||| || |||||||| ||||| || |||||| |||||||| | ||||||||||| |
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|
| T |
37212172 |
tattaagaaaaattatcggcaaacatggagatattaccaagaattgtgtgacaaagtcggtgaaatttcgttcagctttcttggatacgatctgtgaaat |
37212073 |
T |
|
| Q |
134 |
catagcagagttggacaaaaagaatgctagtattgctaacatctcaagcaaaaacctggaaaagaagattgacgtcgtgagttatataaaaaaccagaac |
233 |
Q |
| |
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||| |||| |||||||||||| || |||||||||||| | | || ||||| ||| ||||| | | ||| | | | |||||||| | ||| |
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|
| T |
37212072 |
aatatcagatttggacaaaaaggat------attgctaacatcaaaggaaatgacctgaaaattaagatcggtgacgttaatgacataaaaaatctgaaa |
37211979 |
T |
|
| Q |
234 |
gtggatgttgaatggcttcacagcaggctaactgagatacttgaggcaaggcgaattcttaag |
296 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
37211978 |
gtggaagttgagtggcttcacaccaggctaactgagatacttgaggcaaggcagattcttaag |
37211916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 37183737 - 37183604
Alignment:
| Q |
26 |
tatgccggtattaagaaaaatcatcggcaagcatggagatattgtgaagaactgcacgacaaagtttgtgaagttccgttcattgttcttggaggcaatc |
125 |
Q |
| |
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||||||| | ||||||||||| ||||| |||||||||||||||| ||||| ||| | |||||| ||| || |||||||| |||| |||||| ||| |
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| T |
37183737 |
tatgccgatgttaagaaaaattatcggtaagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcggtgttgttggagatgatc |
37183638 |
T |
|
| Q |
126 |
tgtgaaatcatagcagagttggacaaaaagaatg |
159 |
Q |
| |
|
|||| ||| ||| |||| |||||| ||||||||| |
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|
| T |
37183637 |
tgtggaattatatcagatttggacgaaaagaatg |
37183604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 37194869 - 37194736
Alignment:
| Q |
26 |
tatgccggtattaagaaaaatcatcggcaagcatggagatattgtgaagaactgcacgacaaagtttgtgaagttccgttcattgttcttggaggcaatc |
125 |
Q |
| |
|
||||||| | ||||||||||| ||||| |||||||||||||||| ||||| ||| | |||||| ||| || |||||||| |||| |||||| ||| |
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| T |
37194869 |
tatgccgatgttaagaaaaattatcggtaagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcggtgttgttggagatgatc |
37194770 |
T |
|
| Q |
126 |
tgtgaaatcatagcagagttggacaaaaagaatg |
159 |
Q |
| |
|
|||| ||| ||| |||| |||||| ||||||||| |
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|
| T |
37194769 |
tgtggaattatatcagatttggacgaaaagaatg |
37194736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 732 - 801
Target Start/End: Complemental strand, 37202146 - 37202078
Alignment:
| Q |
732 |
gtgtaagattataacaaagtatttatgcatggtgatttgaatcttcatatgaatgtgccttatacatttg |
801 |
Q |
| |
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||||||||||||| | |||||||||||||| ||||||||||| | |||||||||| |||||||| ||||| |
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| T |
37202146 |
gtgtaagattatagccaagtatttatgcatagtgatttgaatttccatatgaatg-gccttatagatttg |
37202078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 37217627 - 37217573
Alignment:
| Q |
246 |
tggcttcacagcaggctaactgagatacttgaggcaaggcgaattcttaagcaga |
300 |
Q |
| |
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|||||||| | ||||||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
37217627 |
tggcttcaaaccaggctaactggaatacttgaggcaaggcagattcttaagcaga |
37217573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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