View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11776_low_20 (Length: 298)
Name: NF11776_low_20
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 38300677 - 38300397
Alignment:
| Q |
1 |
caattagccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300677 |
caattagccaatgttgaaagcttaatccttgggtcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
38300578 |
T |
|
| Q |
101 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300577 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaaggcattggactttccaaacttgcaaaaaatacaagttggaagt |
38300478 |
T |
|
| Q |
201 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttcca |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300477 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttcca |
38300397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 38309324 - 38309044
Alignment:
| Q |
1 |
caattagccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
100 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
38309324 |
caataagccaatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaacttggtcaaca |
38309225 |
T |
|
| Q |
101 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
200 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38309224 |
tcctttcaaccattctctttatatcttcatcttcatctcccaaattatcaactagaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
38309125 |
T |
|
| Q |
201 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttcca |
281 |
Q |
| |
|
| ||||||||| |||| ||| ||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
38309124 |
acgatgtgttgcaccatttatcgtgttggcagtttcgctaaaaggcaacaagaatgcacaaatcttttctactcttttcca |
38309044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 38321422 - 38321141
Alignment:
| Q |
1 |
caattagccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
100 |
Q |
| |
|
|||| ||||||||| |||| ||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
38321422 |
caatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatca |
38321323 |
T |
|
| Q |
101 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||| |
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| T |
38321322 |
tcctttcagccattctctttatagcttcatcttcatctctcaaactatcagctaaaacacattgaactttccaaacttgcaaaaaatacatgtttgaagt |
38321223 |
T |
|
| Q |
201 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccat |
282 |
Q |
| |
|
|||||||| |||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||| |||||||||||| |
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| T |
38321222 |
aggatgtgctgtgccattaatcatgttagcagtttcccttaaaggcaacaagaacacacaaatcttttcaactcttttccat |
38321141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 38317327 - 38317047
Alignment:
| Q |
1 |
caattagccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
100 |
Q |
| |
|
|||| |||||| || |||| ||| |||| ||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||| || |
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|
| T |
38317327 |
caataagccaacgtcgaaaacttcatccgtgggtcaagaactgctcccagtgcaagaacaacactatactcatcccaatatttgtcaaactcgctcatca |
38317228 |
T |
|
| Q |
101 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
38317227 |
tcctttcagccattctctttataactttatcttcatctcccaaactatcaactagaacacattggactttccaaacttgcaaaaaacacaagtttgaagt |
38317128 |
T |
|
| Q |
201 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttcca |
281 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||| |
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|
| T |
38317127 |
aggatgcgttgtgtcattaatcatgttggcagtttcataaaaaggcagcaagaacgcacaaatcttttcaactcttttcca |
38317047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 38326172 - 38325894
Alignment:
| Q |
1 |
caattagccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
100 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||| |||||||||||||||| ||||||||||||||| ||||||| |||| |||| ||||||||| ||| || |
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|
| T |
38326172 |
caataagccaatgttgaaaatttaatccgtgggtcaagaaccgctcccaatgcaagaacaacactgtactcattccaaaatttgtcaaacttgctcatca |
38326073 |
T |
|
| Q |
101 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| | |||||| |||||||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
38326072 |
tcctttcagccattctctttataacttcatcttcatctcccaaagtagcaactagaacacattggactttccaaacttgcaaaaattacaaattggaagt |
38325973 |
T |
|
| Q |
201 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttc |
279 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||||||||| ||||||||||||||| |||| ||||||| |||||||||| |
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|
| T |
38325972 |
aggatgcgttgtgtcattaatcatgttagcagtttcacaaaaaggcaacaagaatgcacagatcttttctactcttttc |
38325894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 281
Target Start/End: Complemental strand, 38313911 - 38313638
Alignment:
| Q |
6 |
agccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctt |
105 |
Q |
| |
|
||||||| |||||| || |||| ||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| || ||| ||| |
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|
| T |
38313911 |
agccaatcttgaaaatttcatccgtgggtcaagaactgctcccattgcaagaacaacacta--ctcatcccaatatttcttaaacttgcccatcatactt |
38313814 |
T |
|
| Q |
106 |
tcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggat |
205 |
Q |
| |
|
| |||||||||| || | |||||||| ||||||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38313813 |
ttagccattctcgctacaaattcatcttcatctcccaaactatcaactaaaacacattgaagtttccaaacttgcgaaaaatacaagttggaagtaggat |
38313714 |
T |
|
| Q |
206 |
gtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttcca |
281 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |||||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
38313713 |
gtgttgcgccattaatcatgttggcagtttcacaaaaaggtaacaagaatgcacaaatcttttctactcttttcca |
38313638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 47 - 278
Target Start/End: Complemental strand, 38306540 - 38306309
Alignment:
| Q |
47 |
ccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttcagccattctctttatatcttcatcttgatctcccaaaca |
146 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||| || |||||||| |||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
38306540 |
ccattgcaagaacaacactatgctcatcccaatatttcttaaacttgcccatcatccttttagccattctcgctataacttcatcttcatctcccaaact |
38306441 |
T |
|
| Q |
147 |
atcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggc |
246 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
38306440 |
atcaacaagaacacattggactttccaaacttgcaaaaaatacaagttggaagtgggatgtgttgcaccattgatcatgttggcagtttcacgaaaaggc |
38306341 |
T |
|
| Q |
247 |
aacaagaacacacaaatcttttgtactctttt |
278 |
Q |
| |
|
|||| ||| |||||||||||| |||||||| |
|
|
| T |
38306340 |
aacatgaatgcacaaatcttttccactctttt |
38306309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 38850018 - 38850298
Alignment:
| Q |
1 |
caattagccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
100 |
Q |
| |
|
|||| |||||| |||| || ||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |
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|
| T |
38850018 |
caataagccaaggttgtaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatca |
38850117 |
T |
|
| Q |
101 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38850118 |
tcctttcagccattttctttatatcttcatcttcatctcccaaactatcaactagaacacattggactttccaaacttgtaaaaaatacaagttggaagt |
38850217 |
T |
|
| Q |
201 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttcca |
281 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
38850218 |
aggatgtgttgtgctattaatcatgttggcagtttcacaaaaaggcaacaggaatgcacaaatcttttctactcttttcca |
38850298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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