View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11776_low_21 (Length: 290)
Name: NF11776_low_21
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 28864338 - 28864571
Alignment:
| Q |
1 |
aattttgtcaaagaaatcttggatttttaaatcataaaaacatgaattgattactttataaaccttccatcaacatttagttaaaacaaagcttaacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28864338 |
aattttgtcaaagaaatcttggatttttaaatca--aaaccattaattgattactttataaaccttccatcaacatttagttaaaacaaagcttaacatt |
28864435 |
T |
|
| Q |
101 |
tttgaactaattaatggtacatatcataagataaaaagatattttttgatgtcatattttgcctgtattaagcaacataggggcttaatgagcaaaaata |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
28864436 |
tttgaactaattaatggtacataccataagataaaaagatattttttgatgttatattttgcctgtattaagcaacataagggcttaaagagcaaaaata |
28864535 |
T |
|
| Q |
201 |
tcaacatgatttacattctcacctaagaagaaaatg |
236 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
28864536 |
tcaacatgatttacaatctcacctaacaagaaaatg |
28864571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 28864603 - 28864636
Alignment:
| Q |
228 |
aagaaaatgacacattagtcaacaagttcagaaa |
261 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
28864603 |
aagaaaatgacactttagtcaacaagttcagaaa |
28864636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University