View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_low_27 (Length: 260)
Name: NF11776_low_27
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 38792269 - 38792489
Alignment:
| Q |
19 |
atgatgattatgttgattttcatatcctacaaagagagacaaagaggttgtattcccgcatagtaaaaaac-aacatgttgtatttccatcaataagaaa |
117 |
Q |
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| T |
38792269 |
atgatgattgtgttgattttcatatcctacaaagagaggtaaagaggttgtattcccgcatagtaaaaaaccaacatgttgtatttccatcaataagaaa |
38792368 |
T |
|
| Q |
118 |
acttcaaaccaacacctgtaataggtcagaacaaacaacattatggtttatgacatgagaaaaataaggagcctaaaaagaatacatacttaataagtta |
217 |
Q |
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| T |
38792369 |
acttcaaaccaacacctgtaataggtcagaacaagcaacattatggtttatgacatgagaaaaataaggagcctgaaaagaatacatacttaataagtta |
38792468 |
T |
|
| Q |
218 |
tgttcatgatataaaagttca |
238 |
Q |
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||||||||||||||||||||| |
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| T |
38792469 |
tgttcatgatataaaagttca |
38792489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 224
Target Start/End: Complemental strand, 6759010 - 6758850
Alignment:
| Q |
66 |
ttgtattcccgcatagtaaaaaac-aacatgttgtatttccatc-aataagaaaacttcaaaccaacacctgtaataggtcagaacaaacaacattatgg |
163 |
Q |
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| T |
6759010 |
ttgtattcccacacaataaaaaaccaacagattgtattttcatataataagaagacttcaaaccaatacctgtaacaaatcagaacaagtagcattatgg |
6758911 |
T |
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| Q |
164 |
tttatgacatgagaaaaataaggagcctaaaaagaatacatacttaataagttatgttcat |
224 |
Q |
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| T |
6758910 |
tttgtgacctgagagtaataaggagcctgcaaagaatatataattaaccacttatgttcat |
6758850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 224
Target Start/End: Original strand, 6457838 - 6457998
Alignment:
| Q |
66 |
ttgtattcccgcatagtaaaaaac-aacatgttgtatttccatc-aataagaaaacttcaaaccaacacctgtaataggtcagaacaaacaacattatgg |
163 |
Q |
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| T |
6457838 |
ttgtattcccacacaataaaaaaccaacagattgtattttcatataataagaagacttcaaaccaatacctgtaacatatcaaaacaagtagcattatgg |
6457937 |
T |
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| Q |
164 |
tttatgacatgagaaaaataaggagcctaaaaagaatacatacttaataagttatgttcat |
224 |
Q |
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| T |
6457938 |
tttgtgacctgagagtaataaggagcctgcaaagaatatataattaaccacttatgttcat |
6457998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 49962675 - 49962519
Alignment:
| Q |
83 |
aaaaaacaacatgttgtatttccat-caataagaaaacttcaaaccaacacctgtaataggtcagaacaaacaacattatggtttatgacatgagaaaaa |
181 |
Q |
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| T |
49962675 |
aaaaaccaacagattgtattttcatacaataagaagacttcaaaccaatacctgcaacaaatcagaacaagtagcattatagtttgtgacctgagagtaa |
49962576 |
T |
|
| Q |
182 |
taaggagcctaaaaagaatacatacttaataagttatgttcatgatataaaagttca |
238 |
Q |
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| T |
49962575 |
taaggagcctgcaaagaatatataattaaccatttatgttcattataaaaatgttca |
49962519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 24345426 - 24345296
Alignment:
| Q |
108 |
caataagaaaacttcaaaccaacacctgtaataggtcagaacaaacaacattatggtttatgacatgagaaaaataaggagcctaaaaagaatacatact |
207 |
Q |
| |
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||||||||||||||||||| || |||||||| || || |||||| || |||||||||||||||| | |||| |||||||||||| |||||||| ||||| |
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| T |
24345426 |
caataagaaaacttcaaacaaatacctgtaacagatctgaacaagcagcattatggtttatgacctcagaataataaggagcctgcaaagaatatatact |
24345327 |
T |
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| Q |
208 |
taataagttatgttcatgatataaaagttca |
238 |
Q |
| |
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|||| |||||||||||| ||||||| ||||| |
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| T |
24345326 |
taatcagttatgttcataatataaatgttca |
24345296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 238
Target Start/End: Original strand, 38176318 - 38176474
Alignment:
| Q |
83 |
aaaaaacaacatgttgtatttccat-caataagaaaacttcaaaccaacacctgtaataggtcagaacaaacaacattatggtttatgacatgagaaaaa |
181 |
Q |
| |
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||||| ||||| |||||||| ||| ||||||||| |||||||||||| ||||| || | ||||||||| | |||||| |||| |||| ||||| || |
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| T |
38176318 |
aaaaaccaacagattgtattttcatacaataagaagacttcaaaccaatacctgcaacaaatcagaacaagtagcattatagtttgtgacctgagagtaa |
38176417 |
T |
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| Q |
182 |
taaggagcctaaaaagaatacatacttaataagttatgttcatgatataaaagttca |
238 |
Q |
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|||||||||| |||||||| ||| ||||| | |||||||||| ||| ||| ||||| |
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| T |
38176418 |
taaggagcctgcaaagaatatataattaatcacttatgttcattataaaaatgttca |
38176474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 42632725 - 42632854
Alignment:
| Q |
109 |
aataagaaaacttcaaaccaacacctgtaataggtcagaacaaacaacattatggtttatgacatgagaaaaataaggagcctaaaaagaatacatactt |
208 |
Q |
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|||||||| |||||||||||| ||||| || | | ||||||| | ||||||||||| |||| ||||| |||||||||||| |||||||| ||| || |
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| T |
42632725 |
aataagaagacttcaaaccaatacctgcaacaaattagaacaagtagcattatggtttgtgacctgagagtaataaggagcctgcaaagaatatataatt |
42632824 |
T |
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| Q |
209 |
aataagttatgttcatgatataaaagttca |
238 |
Q |
| |
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|| | |||||||||| ||| ||| ||||| |
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| T |
42632825 |
aaccacttatgttcattataaaaatgttca |
42632854 |
T |
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