View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11776_low_29 (Length: 250)

Name: NF11776_low_29
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11776_low_29
NF11776_low_29
[»] chr5 (5 HSPs)
chr5 (159-250)||(38472325-38472416)
chr5 (14-149)||(22860590-22860724)
chr5 (66-118)||(28297695-28297747)
chr5 (159-192)||(26912098-26912131)
chr5 (66-96)||(38472190-38472220)
[»] chr2 (6 HSPs)
chr2 (14-131)||(45107798-45107915)
chr2 (14-131)||(45109517-45109634)
chr2 (66-149)||(37349767-37349849)
chr2 (42-149)||(13968907-13969013)
chr2 (66-149)||(4108924-4109006)
chr2 (159-192)||(42249546-42249579)
[»] chr1 (1 HSPs)
chr1 (16-123)||(7351779-7351886)
[»] chr4 (5 HSPs)
chr4 (14-131)||(25243382-25243498)
chr4 (66-149)||(31954768-31954850)
chr4 (66-149)||(40137846-40137928)
chr4 (41-149)||(24826593-24826701)
chr4 (167-208)||(17319378-17319419)
[»] chr3 (4 HSPs)
chr3 (51-134)||(20127623-20127706)
chr3 (42-149)||(17441730-17441837)
chr3 (66-149)||(14486389-14486471)
chr3 (66-149)||(17472000-17472082)
[»] chr6 (4 HSPs)
chr6 (66-120)||(16990237-16990291)
chr6 (184-250)||(27439868-27439932)
chr6 (159-196)||(16268862-16268899)
chr6 (166-208)||(9927940-9927982)
[»] scaffold0003 (1 HSPs)
scaffold0003 (184-250)||(47430-47494)
[»] chr7 (2 HSPs)
chr7 (66-149)||(17835085-17835166)
chr7 (66-149)||(25248899-25248981)
[»] scaffold0178 (1 HSPs)
scaffold0178 (159-192)||(1530-1563)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 38472325 - 38472416
Alignment:
Q  159 atctttattcatcttcatcttaaacaaaaatccaaaaagatccatttccactatatcaactaaacatctctctctatggacatctttctctc 250  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38472325 atctttattcatcttcatcttaaacaaaaacccaaaaagatccatttccactatatcaactaaccatctctctctatggacatctttctctc 38472416  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 22860590 - 22860724
Alignment:
Q  14 agggggacacttagatgattgaggggggagattccatatagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaa 113  Q
    ||||||||||||||||| |||| |||  |||||| | | |||||||||||  |||| |||||||||||| |||||||||| |||||||||||| |||||     
T  22860590 agggggacacttagatgtttgatgggacagattcaaaacagtgaaaacaatgtattgttcatttacttcgtaagagtgcttttgagactccacgtaggac 22860689  T
Q  114 gtttcactgaacagctcatcttattgtaattaactt 149  Q
    |||||||| | ||||||| | | |||||||||||||    
T  22860690 gtttcactaagcagctca-cctgttgtaattaactt 22860724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 28297747 - 28297695
Alignment:
Q  66 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttc 118  Q
    ||||||||||||||||||||||||||||||| |||||||||||| || |||||    
T  28297747 tattattcatttacttcttaagagtgctcttaagactccacctaagacgtttc 28297695  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 26912131 - 26912098
Alignment:
Q  159 atctttattcatcttcatcttaaacaaaaatcca 192  Q
    ||||||||||||||||||||||||||||||||||    
T  26912131 atctttattcatcttcatcttaaacaaaaatcca 26912098  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 38472190 - 38472220
Alignment:
Q  66 tattattcatttacttcttaagagtgctctt 96  Q
    |||||||||||||||||||||||||||||||    
T  38472190 tattattcatttacttcttaagagtgctctt 38472220  T

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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 45107915 - 45107798
Alignment:
Q  14 agggggacacttagatgattgaggggggagattccatatagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaa 113  Q
    ||||||||||||||||| ||||| |  ||||||||| || ||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||     
T  45107915 agggggacacttagatgtttgagagaagagattccagatggtgaaaacaatgtattattcatttacttcttaatagtgctcttgagactccacctaggat 45107816  T
Q  114 gtttcactgaacagctca 131  Q
    |||||||||| |||||||    
T  45107815 gtttcactgagcagctca 45107798  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 45109634 - 45109517
Alignment:
Q  14 agggggacacttagatgattgaggggggagattccatatagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaa 113  Q
    |||||||| |||||||| ||||| |  ||||||||| || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||     
T  45109634 agggggactcttagatgtttgagagaagagattccaaatggtgaaaacaatgtattattcatttacttcttaagagtgctcttgagactccacctaggat 45109535  T
Q  114 gtttcactgaacagctca 131  Q
    |||||||||| |||||||    
T  45109534 gtttcactgagcagctca 45109517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 37349767 - 37349849
Alignment:
Q  66 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 149  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| | | |||||||||||||    
T  37349767 tattattcatttacttctgaagagtgctcttgagactccacctaggacgtttcactgagcagctca-cctgttgtaattaactt 37349849  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 13968907 - 13969013
Alignment:
Q  42 agattccatatagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgta 141  Q
    |||||||| |||||||||| |   ||||||||| ||| ||||||||||||||||||||||||| |||| || |||||| ||| ||||||| ||| |||||    
T  13968907 agattccagatagtgaaaatagtgtattattcagttatttcttaagagtgctcttgagactcctcctaagacgtttcattgagcagctca-cttgttgta 13969005  T
Q  142 attaactt 149  Q
    ||||||||    
T  13969006 attaactt 13969013  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 4109006 - 4108924
Alignment:
Q  66 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 149  Q
    ||||||||| ||||||||  ||||||||||||||||||||||| ||| |||||||||| ||||||| | | |||||||||||||    
T  4109006 tattattcagttacttctgtagagtgctcttgagactccaccttggacgtttcactgagcagctca-cctgttgtaattaactt 4108924  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 42249579 - 42249546
Alignment:
Q  159 atctttattcatcttcatcttaaacaaaaatcca 192  Q
    |||||||||||||||||||||||| |||||||||    
T  42249579 atctttattcatcttcatcttaaataaaaatcca 42249546  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 7351886 - 7351779
Alignment:
Q  16 ggggacacttagatgattgaggggggagattccatatagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaagt 115  Q
    ||||||||||||||| ||||| | |||||||||| || ||||||||||  |||||||||||||||| ||||||||||||||||||||||||||| || ||    
T  7351886 ggggacacttagatgtttgagagaggagattccagatggtgaaaacaatgtattattcatttactttttaagagtgctcttgagactccacctaagatgt 7351787  T
Q  116 ttcactga 123  Q
    ||||||||    
T  7351786 ttcactga 7351779  T

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Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 25243382 - 25243498
Alignment:
Q  14 agggggacacttagatgattgaggggggagattccatatagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaa 113  Q
    ||||||||||||| ||| ||||||||  | |||||| ||||| ||||||   ||||||||||||||||||| |||||||||||||||||||||||||||     
T  25243382 agggggacactta-atgtttgaggggacaaattccagatagtaaaaacagtgtattattcatttacttcttgagagtgctcttgagactccacctaggat 25243480  T
Q  114 gtttcactgaacagctca 131  Q
    |||||||||| |||||||    
T  25243481 gtttcactgagcagctca 25243498  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 31954768 - 31954850
Alignment:
Q  66 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 149  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||| ||||||| | | |||||||||||||    
T  31954768 tattattcatttactcctgtagagtgctcttgagactccacctaggacgtttcactgagcagctca-cctgttgtaattaactt 31954850  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 40137846 - 40137928
Alignment:
Q  66 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 149  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| | ||||||| | | |||||||||||||    
T  40137846 tattattcatttacttctgaagagttctcttgagactccacctaggatgtttcactaagcagctca-cctgttgtaattaactt 40137928  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 24826593 - 24826701
Alignment:
Q  41 gagattccatatagtgaaaa-caacctattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattg 139  Q
    ||||||||| |||||||||| ||   ||||||||||||||||||  |||||| |||||||||||||||||||| |||||| ||| ||||||| | | |||    
T  24826593 gagattccagatagtgaaaaacattgtattattcatttacttctgtagagtgatcttgagactccacctaggatgtttcattgagcagctca-cctgttg 24826691  T
Q  140 taattaactt 149  Q
    ||||||||||    
T  24826692 taattaactt 24826701  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 17319378 - 17319419
Alignment:
Q  167 tcatcttcatcttaaacaaaaatccaaaaagatccatttcca 208  Q
    |||||||||||||||||||||| ||| ||| |||||||||||    
T  17319378 tcatcttcatcttaaacaaaaacccagaaatatccatttcca 17319419  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 20127706 - 20127623
Alignment:
Q  51 atagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatct 134  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| || |||||||||| ||||||||||    
T  20127706 atagtgaaaacaatgtattattcatttatttcttaagagtgctcttgagactccacctatgatgtttcactgagcagctcatct 20127623  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 17441730 - 17441837
Alignment:
Q  42 agattccatatagtgaaaa-caacctattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgt 140  Q
    |||||||| |||||||||| ||   |||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||| | | ||||    
T  17441730 agattccagatagtgaaaaacattgtattattcatttacttctgaagagtgctctcgagactccacctaggacgtttcactgagcagctca-cctgttgt 17441828  T
Q  141 aattaactt 149  Q
    |||||||||    
T  17441829 aattaactt 17441837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 14486471 - 14486389
Alignment:
Q  66 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 149  Q
    |||||||||||||||||| |||||||||||||||||||||||||  |  ||||||||||||||||||| | |||||||||||||    
T  14486471 tattattcatttacttctgaagagtgctcttgagactccacctaaaacatttcactgaacagctcatc-tgttgtaattaactt 14486389  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 17472000 - 17472082
Alignment:
Q  66 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 149  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||||| |||||||||| ||||||| | | |||||||||||||    
T  17472000 tattattcatttacttctgaagagtgctctcgagactccacgtaggatgtttcactgagcagctca-cctgttgtaattaactt 17472082  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 16990291 - 16990237
Alignment:
Q  66 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  16990291 tattattcatttacttcttaagagtgctcttgagactccacctaagatgtttcac 16990237  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 27439932 - 27439868
Alignment:
Q  184 aaaaatccaaaaagatccatttccactatatcaactaaacatctctctctatggacatctttctctc 250  Q
    ||||| ||| ||||||||||||||||| |||||||||| ||  ||||||||||||| ||||||||||    
T  27439932 aaaaaaccagaaagatccatttccactctatcaactaacca--tctctctatggacctctttctctc 27439868  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 16268862 - 16268899
Alignment:
Q  159 atctttattcatcttcatcttaaacaaaaatccaaaaa 196  Q
    |||||| |||||||||||||||||||||||||||||||    
T  16268862 atcttttttcatcttcatcttaaacaaaaatccaaaaa 16268899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 9927940 - 9927982
Alignment:
Q  166 ttcatcttcatcttaaacaaaaatccaaaaagatccatttcca 208  Q
    |||||||||||||||| |||||| ||| |||||||||||||||    
T  9927940 ttcatcttcatcttaagcaaaaacccagaaagatccatttcca 9927982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 47430 - 47494
Alignment:
Q  184 aaaaatccaaaaagatccatttccactatatcaactaaacatctctctctatggacatctttctctc 250  Q
    ||||| ||| ||||||||||||||||| |||||||||| ||  ||||||||||||| ||||||||||    
T  47430 aaaaaaccagaaagatccatttccactctatcaactaacca--tctctctatggacctctttctctc 47494  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 17835085 - 17835166
Alignment:
Q  66 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 149  Q
    ||||||||| ||||||  ||| ||||||||||||||||||||||||| |||| ||||| ||||||| | | |||||||||||||    
T  17835085 tattattcagttactttgtaa-agtgctcttgagactccacctaggacgttttactgagcagctca-cctgttgtaattaactt 17835166  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 25248981 - 25248899
Alignment:
Q  66 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 149  Q
    ||||||||  ||||||||  ||||||||||||||||||||||| ||| |||| ||||| ||||||| | | |||||||||||||    
T  25248981 tattattctgttacttctgtagagtgctcttgagactccaccttggacgttttactgagcagctca-cctgttgtaattaactt 25248899  T

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Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 1530 - 1563
Alignment:
Q  159 atctttattcatcttcatcttaaacaaaaatcca 192  Q
    ||||||||||||||||||||||||||||||||||    
T  1530 atctttattcatcttcatcttaaacaaaaatcca 1563  T

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