View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11776_low_32 (Length: 243)

Name: NF11776_low_32
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11776_low_32
NF11776_low_32
[»] chr2 (2 HSPs)
chr2 (19-243)||(5699043-5699267)
chr2 (19-243)||(5686838-5687062)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 5699267 - 5699043
Alignment:
Q  19 gaaaagacactgcaattggacttcttacaacatgatatttgtcggtccaaatataccatccaaaaaagtaattctcaggatcacacttacttggtaactg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5699267 gaaaagacactgcaattggacttcttacaacatgatatttgtcggtccaaatataccatccaaaaaagtaattctcaggatcacacttacttggtaactg 5699168  T
Q  119 atctttatttgctgtcactgtgatgacaaaatttcttttctgtccaacatgtttaaatttcagaacatttggagtggctaaaatgttgaattcctttggt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5699167 atctttatttgctgtcactgtgatgacaaaatttcttttctgtccaacatgtttaaatttcagaacatttggagtggctaaaatgttgaattcctttggt 5699068  T
Q  219 gtattagcaataaacttgtaaacac 243  Q
    |||||||||||||||||||||||||    
T  5699067 gtattagcaataaacttgtaaacac 5699043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 5687062 - 5686838
Alignment:
Q  19 gaaaagacactgcaattggacttcttacaacatgatatttgtcggtccaaatataccatccaaaaaagtaattctcaggatcacacttacttggtaactg 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  5687062 gaaaagacactgcaattggacttcttacaacatgataattgtcggtccaaatataccatccaaaatagtatttatcaggatcacacttacttggtaactg 5686963  T
Q  119 atctttatttgctgtcactgtgatgacaaaatttcttttctgtccaacatgtttaaatttcagaacatttggagtggctaaaatgttgaattcctttggt 218  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  5686962 atctctatttgctgtcactgtgatgacaaaattccttttctgtccaacatgtttaaatttcagaacacttgaagtggctaaaatgttgaattcctttggt 5686863  T
Q  219 gtattagcaataaacttgtaaacac 243  Q
    |||||||||||||||||||||||||    
T  5686862 gtattagcaataaacttgtaaacac 5686838  T

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