View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11776_low_33 (Length: 241)
Name: NF11776_low_33
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11776_low_33 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38472736 - 38472959
Alignment:
| Q |
1 |
ttgattcaaatatggtccctttcat-ttagcaattatcaattattcttgctgggttgtttataagtaaattactttggacctcgagattttatatttgcn |
99 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38472736 |
ttgattcaaatatggtccctttcatcttagcaataatcaattattcttgttgggttgtttataagtaaattactttggacctggagattttatatttgct |
38472835 |
T |
|
| Q |
100 |
nnnnnnggggtttgtgatttctttgagttttgctttatccggattatgtgttgctaccaaatattccttttgaaaagatggttcagtgcgtgaagagtgg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38472836 |
ttttttggggtttgtgatttctttgagttttgctttatccggattatgtgttgctaccaaatattccttttgaaaagatggttcagtgcgtgaagagtga |
38472935 |
T |
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| Q |
200 |
aagagcatgcaggagagtagaagg |
223 |
Q |
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||| ||||||||||||||| |||| |
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| T |
38472936 |
aagggcatgcaggagagtaaaagg |
38472959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 5206891 - 5206821
Alignment:
| Q |
146 |
tgtgttgctaccaaatattccttttgaaaagatggttcagtgcgtgaagagtggaagagcatgcaggagag |
216 |
Q |
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||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
5206891 |
tgtgttgctaccatagattccttttgaaaagatggttcagggcgtgaagagtgggtgagcatgcaggagag |
5206821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 47666 - 47890
Alignment:
| Q |
1 |
ttgattcaaatatggtccctttcat-ttagcaattatcaattattcttgctgggttgtttataagtaaattactttggacctcgagattttatatttgcn |
99 |
Q |
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||||||||||| ||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47666 |
ttgattcaaatctggtccctttcatcttagcaataatcagttgttcttgctgggttgtttataagtaaattactttggacctggagattttatatttttt |
47765 |
T |
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| Q |
100 |
nnnnnng----gggtttg-tgatttctttgagttttgcttt-atccggattatgtgttgctaccaaatattccttttgaaaagatggttcagtgcgtgaa |
193 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| |
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| T |
47766 |
tttttttttttgggtttgatgatttctttgagttttgcttttatccggattatgtgttgctaccaaaaattccttttgaaaagatgggtcagggcgtgaa |
47865 |
T |
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| Q |
194 |
gagtggaagagcatgcaggagagta |
218 |
Q |
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| T |
47866 |
gagtggaagagcatgcaggagagta |
47890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 27439696 - 27439472
Alignment:
| Q |
1 |
ttgattcaaatatggtccctttcat-ttagcaattatcaattattcttgctgggttgtttataagtaaattactttggacctcgagattttatatttgcn |
99 |
Q |
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||||||||||| ||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27439696 |
ttgattcaaatctggtccctttcatcttagcaataatcagttgttcttgctgggttgtttataagtaaattactttggacctggagattttatatttttt |
27439597 |
T |
|
| Q |
100 |
nnnnnng----gggtttg-tgatttctttgagttttgcttt-atccggattatgtgttgctaccaaatattccttttgaaaagatggttcagtgcgtgaa |
193 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| |
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| T |
27439596 |
tttttttttttgggtttgatgatttctttgagttttgcttttatccggattatgtgttgctaccaaaaattccttttgaaaagatgggtcagggcgtgaa |
27439497 |
T |
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| Q |
194 |
gagtggaagagcatgcaggagagta |
218 |
Q |
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||||||||||||||||||||||||| |
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| T |
27439496 |
gagtggaagagcatgcaggagagta |
27439472 |
T |
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