View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11776_low_34 (Length: 241)

Name: NF11776_low_34
Description: NF11776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11776_low_34
NF11776_low_34
[»] chr2 (3 HSPs)
chr2 (1-149)||(16541875-16542023)
chr2 (173-221)||(16541814-16541862)
chr2 (17-58)||(33174486-33174527)
[»] chr7 (2 HSPs)
chr7 (17-58)||(42515525-42515566)
chr7 (17-58)||(46425722-46425763)
[»] chr8 (2 HSPs)
chr8 (17-58)||(27022462-27022503)
chr8 (17-57)||(44041872-44041912)
[»] chr4 (1 HSPs)
chr4 (17-57)||(21220449-21220489)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 16542023 - 16541875
Alignment:
Q  1 cctacacagctccggaatccctctcattctgatgtgattcggctcgcctagaagctgtttgaagccgccttgtacactgactaccactcctcatccttat 100  Q
    |||||||||||| || |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  16542023 cctacacagctctgggatccctatcattctgatgtgattcggctcacctagaagctgtttgaagctgccttgtacactgactaccactcctcatccttct 16541924  T
Q  101 tggtctcgagcgttatagtttactcggtttaaaacacctctatttagtt 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16541923 tggtctcgagcgttatagtttactcggtttaaaacacctctatttagtt 16541875  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 16541862 - 16541814
Alignment:
Q  173 cgcaaactatttcatctaaatgtataggtaaagaaatcaacaatacagt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16541862 cgcaaactatttcatctaaatgtataggtaaagaaatcaacaatacagt 16541814  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 33174527 - 33174486
Alignment:
Q  17 atccctctcattctgatgtgattcggctcgcctagaagctgt 58  Q
    ||||||||||||| |||||||||||| ||| |||||||||||    
T  33174527 atccctctcattccgatgtgattcggttcgtctagaagctgt 33174486  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 42515566 - 42515525
Alignment:
Q  17 atccctctcattctgatgtgattcggctcgcctagaagctgt 58  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  42515566 atccctctcattctgatgtgattcggttcgtctagaagctgt 42515525  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 46425763 - 46425722
Alignment:
Q  17 atccctctcattctgatgtgattcggctcgcctagaagctgt 58  Q
    ||||||||||||| |||||||||||||| | |||||||||||    
T  46425763 atccctctcattccgatgtgattcggcttgtctagaagctgt 46425722  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 27022462 - 27022503
Alignment:
Q  17 atccctctcattctgatgtgattcggctcgcctagaagctgt 58  Q
    ||||||||||||| |||||||||||||||  |||||||||||    
T  27022462 atccctctcattccgatgtgattcggctcctctagaagctgt 27022503  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 44041912 - 44041872
Alignment:
Q  17 atccctctcattctgatgtgattcggctcgcctagaagctg 57  Q
    |||||||||||||||||||||||||| | ||||| ||||||    
T  44041912 atccctctcattctgatgtgattcggtttgcctataagctg 44041872  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 21220449 - 21220489
Alignment:
Q  17 atccctctcattctgatgtgattcggctcgcctagaagctg 57  Q
    |||||||||||||||||||||||||| ||  ||||||||||    
T  21220449 atccctctcattctgatgtgattcggttcctctagaagctg 21220489  T

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